View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11386A_low_352 (Length: 245)
Name: NF11386A_low_352
Description: NF11386A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11386A_low_352 |
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Alignment Details
Target: chr7 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 4 - 233
Target Start/End: Original strand, 41661374 - 41661598
Alignment:
| Q |
4 |
atcaagcagtcaaagatcaaaacatgttcaatcatatgcaagcaaacatcccacaagttaaaatattagtctagaaaata-agccatgtgttttgtccta |
102 |
Q |
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| T |
41661374 |
atcaagcagtcaaagattaaaacatgttcaatcatatgcaagcaaacatcccacaagttaaaatattagtctacaaaatatagccatgtgttttgcccta |
41661473 |
T |
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| Q |
103 |
gtatgagtcgtaaataactccagaatataaacaaagtnnnnnnnntaaaatatgtaggaaattaaattaaatcaaattagtatatacaatgtgagtatat |
202 |
Q |
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|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||||||| |
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| T |
41661474 |
gtatgagtcgtaaataactccaaaatataaacaaagt-aaaaaaataaaatatgtaggaaattaaattaaatcaaattagtatata-----taagtatat |
41661567 |
T |
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| Q |
203 |
aaaaaatcaattgaacttttcacacaatatt |
233 |
Q |
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||||||| ||||||||||||||||||||||| |
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| T |
41661568 |
aaaaaattaattgaacttttcacacaatatt |
41661598 |
T |
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