View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11386A_low_355 (Length: 244)
Name: NF11386A_low_355
Description: NF11386A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11386A_low_355 |
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| [»] chr2 (1 HSPs) |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 20 - 244
Target Start/End: Original strand, 3424099 - 3424328
Alignment:
| Q |
20 |
tattaccaatttcaagacaaaggaaatgacagaattgatcaagttccacaaagaagttgaatctgtttttgagaaactaactgatgaatctcaggttagt |
119 |
Q |
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| T |
3424099 |
tattaccaatttcaagacaaaggaaatgacagaattgatcaagttccacaaagaagttgaatctgtttttgagaaactaactgatgaatctcaggttagt |
3424198 |
T |
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| Q |
120 |
ttaattgcactacaatctaatgcattta-----tcatactaattaatgattccttcaataattattaattattatacaatatttatgctcataggtgtta |
214 |
Q |
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| T |
3424199 |
ttaattgcactacaatctaatgcatttatgcatttatactaattaatgattctttcaataattattaattattatacaatatttatgctcataggtgtta |
3424298 |
T |
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| Q |
215 |
tcaaggtttgaaggtttcccctcaaagaag |
244 |
Q |
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| T |
3424299 |
tcaaggtttgaaggtttcccctcaaagaag |
3424328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 169; Significance: 9e-91; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 21 - 244
Target Start/End: Complemental strand, 11917303 - 11917083
Alignment:
| Q |
21 |
attaccaatttcaagacaaaggaaatgacagaattgatcaagttccacaaagaagttgaatctgtttttgagaaactaactgatgaatctcaggttagtt |
120 |
Q |
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| T |
11917303 |
attaccaatttcaagacaaaggaaatgacagaattgatcaagttccacaaagatgttgaatctgttcttgagaaactaactgatgaatcttaggttagtt |
11917204 |
T |
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| Q |
121 |
taattgcactacaatctaatgcatttatcatactaattaatgattccttcaataattattaattattatacaatatttatgctcataggtgttatcaagg |
220 |
Q |
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| T |
11917203 |
taattgcactacaatctaatgcatttatcatattaattaatgattctttcaataatcattaattattatacaat-tctatcct--taggtgttatcaagg |
11917107 |
T |
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| Q |
221 |
tttgaaggtttcccctcaaagaag |
244 |
Q |
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| T |
11917106 |
tttgaaggtttcccatcaaagaag |
11917083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 21 - 120
Target Start/End: Complemental strand, 35743047 - 35742948
Alignment:
| Q |
21 |
attaccaatttcaagacaaaggaaatgacagaattgatcaagttccacaaagaagttgaatctgtttttgagaaactaactgatgaatctcaggttagtt |
120 |
Q |
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||||| ||||||||||||||||| ||||| ||||||| ||||||||||||||| ||||||||| || ||||||| |||||||||||||| ||||| |||| |
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| T |
35743047 |
attactaatttcaagacaaaggacatgaccgaattgagcaagttccacaaagatgttgaatctattcttgagaatctaactgatgaatcacaggtaagtt |
35742948 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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