View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11386A_low_366 (Length: 243)

Name: NF11386A_low_366
Description: NF11386A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11386A_low_366
NF11386A_low_366
[»] chr1 (25 HSPs)
chr1 (127-241)||(48444967-48445081)
chr1 (14-78)||(4055484-4055548)
chr1 (14-78)||(4817269-4817333)
chr1 (14-80)||(9831501-9831567)
chr1 (14-79)||(46220258-46220323)
chr1 (14-78)||(18126851-18126915)
chr1 (14-78)||(47669119-47669183)
chr1 (15-78)||(1236244-1236307)
chr1 (14-78)||(10737914-10737978)
chr1 (14-79)||(33020205-33020270)
chr1 (14-78)||(1749536-1749600)
chr1 (14-78)||(48564818-48564881)
chr1 (14-63)||(8889457-8889506)
chr1 (14-80)||(3384808-3384872)
chr1 (30-77)||(7414208-7414255)
chr1 (45-78)||(10737701-10737734)
chr1 (45-78)||(46220503-46220536)
chr1 (45-78)||(47669363-47669396)
chr1 (45-77)||(1236071-1236103)
chr1 (47-78)||(48565063-48565094)
chr1 (45-75)||(9831747-9831777)
chr1 (45-78)||(8889687-8889720)
chr1 (14-55)||(26842462-26842503)
chr1 (45-78)||(33023428-33023461)
chr1 (45-78)||(37875727-37875760)
[»] chr7 (32 HSPs)
chr7 (14-79)||(37179544-37179609)
chr7 (14-79)||(46467548-46467613)
chr7 (14-78)||(17904163-17904227)
chr7 (14-78)||(29427377-29427441)
chr7 (14-79)||(26770178-26770243)
chr7 (14-78)||(6387905-6387969)
chr7 (14-81)||(6389729-6389796)
chr7 (14-78)||(29891039-29891103)
chr7 (14-74)||(31503150-31503210)
chr7 (14-78)||(41922067-41922131)
chr7 (14-70)||(9876271-9876327)
chr7 (14-75)||(9332364-9332425)
chr7 (14-78)||(4405109-4405173)
chr7 (14-78)||(12252069-12252133)
chr7 (14-78)||(29722955-29723019)
chr7 (14-78)||(43701551-43701615)
chr7 (14-78)||(19523908-19523974)
chr7 (14-81)||(33379180-33379247)
chr7 (24-63)||(46689878-46689917)
chr7 (14-63)||(49011071-49011120)
chr7 (30-78)||(31858323-31858371)
chr7 (24-63)||(33974506-33974545)
chr7 (24-58)||(9215688-9215722)
chr7 (45-79)||(29723381-29723415)
chr7 (45-79)||(37179330-37179364)
chr7 (45-78)||(4405353-4405386)
chr7 (45-78)||(17904407-17904440)
chr7 (45-78)||(29890826-29890859)
chr7 (46-78)||(46467335-46467367)
chr7 (45-79)||(6387691-6387725)
chr7 (127-165)||(19736448-19736486)
chr7 (46-78)||(26770424-26770456)
[»] chr8 (23 HSPs)
chr8 (14-78)||(2509009-2509073)
chr8 (14-78)||(33837942-33838006)
chr8 (14-78)||(45334489-45334553)
chr8 (16-73)||(13469720-13469777)
chr8 (14-78)||(25106211-25106275)
chr8 (14-78)||(28378947-28379011)
chr8 (14-78)||(9739985-9740049)
chr8 (14-78)||(27024433-27024497)
chr8 (14-78)||(27793404-27793468)
chr8 (14-79)||(38495685-38495750)
chr8 (14-78)||(25978972-25979036)
chr8 (14-78)||(32183695-32183759)
chr8 (14-78)||(8235162-8235226)
chr8 (16-63)||(2626667-2626714)
chr8 (46-80)||(9740231-9740265)
chr8 (129-171)||(12838951-12838993)
chr8 (45-79)||(33837728-33837762)
chr8 (45-78)||(25106455-25106488)
chr8 (45-78)||(27027655-27027688)
chr8 (45-78)||(28379191-28379224)
chr8 (45-78)||(45334276-45334309)
chr8 (45-79)||(38495471-38495505)
chr8 (46-78)||(13469508-13469540)
[»] chr6 (15 HSPs)
chr6 (14-78)||(32274434-32274498)
chr6 (14-78)||(27312329-27312393)
chr6 (14-76)||(8504915-8504977)
chr6 (14-78)||(12174700-12174764)
chr6 (30-78)||(29302500-29302548)
chr6 (14-71)||(5003889-5003946)
chr6 (14-79)||(18741946-18742011)
chr6 (14-78)||(7156438-7156502)
chr6 (29-78)||(29452771-29452820)
chr6 (14-80)||(31171203-31171269)
chr6 (45-78)||(8504733-8504766)
chr6 (45-78)||(27312114-27312147)
chr6 (45-78)||(2543325-2543358)
chr6 (45-78)||(32274678-32274711)
chr6 (46-78)||(18742191-18742223)
[»] chr5 (21 HSPs)
chr5 (14-78)||(12399159-12399223)
chr5 (14-78)||(34208538-34208602)
chr5 (14-78)||(4145694-4145758)
chr5 (14-78)||(23090298-23090362)
chr5 (14-78)||(29874954-29875018)
chr5 (14-79)||(4695375-4695440)
chr5 (14-79)||(42793039-42793104)
chr5 (14-78)||(3077597-3077661)
chr5 (14-78)||(41610630-41610694)
chr5 (14-63)||(12096417-12096466)
chr5 (45-80)||(42757803-42757838)
chr5 (45-79)||(12398945-12398979)
chr5 (30-75)||(4434783-4434828)
chr5 (45-78)||(29875198-29875231)
chr5 (14-63)||(42758023-42758072)
chr5 (45-78)||(42793562-42793595)
chr5 (46-78)||(23090543-23090575)
chr5 (46-78)||(41610373-41610405)
chr5 (29-63)||(594328-594362)
chr5 (129-206)||(21750665-21750742)
chr5 (45-78)||(34208782-34208815)
[»] chr3 (34 HSPs)
chr3 (14-78)||(1352209-1352273)
chr3 (14-78)||(18996967-18997031)
chr3 (14-78)||(18999506-18999570)
chr3 (14-78)||(29371751-29371815)
chr3 (14-78)||(39528749-39528813)
chr3 (14-78)||(28228436-28228500)
chr3 (14-78)||(32677690-32677754)
chr3 (14-78)||(41349584-41349648)
chr3 (14-78)||(39807192-39807256)
chr3 (14-75)||(21974152-21974213)
chr3 (14-75)||(21996583-21996644)
chr3 (16-75)||(22157261-22157320)
chr3 (14-72)||(38855323-38855381)
chr3 (14-78)||(55365908-55365972)
chr3 (14-71)||(29014903-29014960)
chr3 (14-78)||(36738047-36738111)
chr3 (14-79)||(49319346-49319411)
chr3 (30-79)||(32839948-32839997)
chr3 (14-63)||(49041058-49041107)
chr3 (16-63)||(39518422-39518469)
chr3 (45-80)||(39528993-39529028)
chr3 (45-79)||(1351995-1352029)
chr3 (45-78)||(18997211-18997244)
chr3 (45-78)||(18999750-18999783)
chr3 (45-78)||(29014690-29014723)
chr3 (45-78)||(36737834-36737867)
chr3 (45-78)||(38855561-38855594)
chr3 (45-78)||(39518651-39518684)
chr3 (45-78)||(41349371-41349404)
chr3 (46-78)||(46878980-46879012)
chr3 (45-78)||(29371538-29371571)
chr3 (45-78)||(32677477-32677510)
chr3 (127-200)||(32933367-32933440)
chr3 (45-78)||(39806979-39807012)
[»] chr4 (18 HSPs)
chr4 (14-78)||(30469381-30469445)
chr4 (14-78)||(8955989-8956053)
chr4 (14-78)||(45590742-45590806)
chr4 (15-68)||(34334342-34334395)
chr4 (14-75)||(39481906-39481967)
chr4 (14-78)||(19256186-19256250)
chr4 (14-78)||(33288618-33288682)
chr4 (28-78)||(36016279-36016329)
chr4 (14-79)||(18835704-18835769)
chr4 (14-72)||(49162108-49162166)
chr4 (14-63)||(36968353-36968402)
chr4 (24-63)||(26025745-26025784)
chr4 (16-63)||(50774278-50774325)
chr4 (44-78)||(19257103-19257137)
chr4 (45-75)||(8955779-8955809)
chr4 (45-78)||(45590986-45591019)
chr4 (45-78)||(49162332-49162365)
chr4 (45-77)||(39482106-39482138)
[»] chr2 (16 HSPs)
chr2 (14-78)||(35793119-35793183)
chr2 (14-78)||(43041062-43041126)
chr2 (14-76)||(15233757-15233819)
chr2 (14-79)||(44104769-44104834)
chr2 (14-78)||(41252415-41252479)
chr2 (14-78)||(31296083-31296147)
chr2 (14-78)||(10118665-10118729)
chr2 (14-78)||(41642891-41642958)
chr2 (14-63)||(21727684-21727733)
chr2 (45-79)||(43040848-43040882)
chr2 (45-78)||(10112339-10112372)
chr2 (45-78)||(15233999-15234032)
chr2 (14-63)||(31903592-31903641)
chr2 (46-78)||(44104546-44104578)
chr2 (127-165)||(3048281-3048319)
chr2 (14-78)||(36963131-36963195)
[»] scaffold0103 (1 HSPs)
scaffold0103 (17-78)||(44619-44681)


Alignment Details
Target: chr1 (Bit Score: 83; Significance: 2e-39; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 127 - 241
Target Start/End: Original strand, 48444967 - 48445081
Alignment:
Q  127 aacatatataatatttattctcacatgagatgtgtgacttaaagagtcgtacttgatatataaagaatgaaggagatatacattcttaatgtattggtgg 226  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| ||||||| ||||||||   |||||||||    
T  48444967 aacatatataatatttattctcacatgagatgtgtgacttaaagagtcatacttgatatatgaagaatgaaagagatatgcattcttagcatattggtgg 48445066  T
Q  227 tttgtgcatattgtt 241  Q
    ||||||||| |||||    
T  48445067 tttgtgcatgttgtt 48445081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 4055548 - 4055484
Alignment:
Q  14 acatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagta 78  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4055548 acatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagta 4055484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 4817333 - 4817269
Alignment:
Q  14 acatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagta 78  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4817333 acatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagta 4817269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 14 - 80
Target Start/End: Complemental strand, 9831567 - 9831501
Alignment:
Q  14 acatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagtaca 80  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  9831567 acatcaaaagttttggaatatagttgaaattctaaaacatcaaaagaaaaggaatggagggagtaca 9831501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 14 - 79
Target Start/End: Complemental strand, 46220323 - 46220258
Alignment:
Q  14 acatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagtac 79  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  46220323 acatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatagagggagtac 46220258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 18126915 - 18126851
Alignment:
Q  14 acatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagta 78  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18126915 acatcaaaagttttagaatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagta 18126851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 47669183 - 47669119
Alignment:
Q  14 acatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagta 78  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47669183 acatcaaaaattttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagta 47669119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 15 - 78
Target Start/End: Original strand, 1236244 - 1236307
Alignment:
Q  15 catcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagta 78  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||    
T  1236244 catcaaaagttttggaatatagttaaagttctaaaacatcaaaagaaaatgaatggagggagta 1236307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 10737914 - 10737978
Alignment:
Q  14 acatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagta 78  Q
    |||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||    
T  10737914 acatcaaaagttttagaatatagttgaagttctaaaacattaaaagaaaaggaatgaagggagta 10737978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 14 - 79
Target Start/End: Complemental strand, 33020270 - 33020205
Alignment:
Q  14 acatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagtac 79  Q
    |||||||||||||||||| | |||| ||| ||||||||||||||||||||||||||||||||||||    
T  33020270 acatcaaaagttttggaaaaaagtttaagctctaaaacatcaaaagaaaaggaatggagggagtac 33020205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 1749536 - 1749600
Alignment:
Q  14 acatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagta 78  Q
    |||||||||||||||| ||||| || ||||||||||||||||||||||||||||| |||| ||||    
T  1749536 acatcaaaagttttggtatataattaaagttctaaaacatcaaaagaaaaggaatagaggaagta 1749600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 48564881 - 48564818
Alignment:
Q  14 acatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagta 78  Q
    ||||||||| ||||||||||||||||||||| ||||||||| ||||||||| |||||||||||||    
T  48564881 acatcaaaatttttggaatatagttgaagttttaaaacatc-aaagaaaagtaatggagggagta 48564818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 14 - 63
Target Start/End: Complemental strand, 8889506 - 8889457
Alignment:
Q  14 acatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaa 63  Q
    |||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  8889506 acatcaaaagttttggaatatagttgaagttctaaaacataaaaaaaaaa 8889457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 14 - 80
Target Start/End: Original strand, 3384808 - 3384872
Alignment:
Q  14 acatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagtaca 80  Q
    ||||||||||||||| ||||  ||||| |||||||||||||||||||||| ||||| ||||||||||    
T  3384808 acatcaaaagttttgaaata--gttgaggttctaaaacatcaaaagaaaaagaatgaagggagtaca 3384872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 30 - 77
Target Start/End: Complemental strand, 7414255 - 7414208
Alignment:
Q  30 aatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagt 77  Q
    ||||||||||||||||||||||||||||| |||| |||||||||||||    
T  7414255 aatatagttgaagttctaaaacatcaaaaaaaaatgaatggagggagt 7414208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 78
Target Start/End: Complemental strand, 10737734 - 10737701
Alignment:
Q  45 ctaaaacatcaaaagaaaaggaatggagggagta 78  Q
    ||||||||||||||||||||||||||||||||||    
T  10737734 ctaaaacatcaaaagaaaaggaatggagggagta 10737701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 78
Target Start/End: Original strand, 46220503 - 46220536
Alignment:
Q  45 ctaaaacatcaaaagaaaaggaatggagggagta 78  Q
    ||||||||||||||||||||||||||||||||||    
T  46220503 ctaaaacatcaaaagaaaaggaatggagggagta 46220536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 78
Target Start/End: Original strand, 47669363 - 47669396
Alignment:
Q  45 ctaaaacatcaaaagaaaaggaatggagggagta 78  Q
    ||||||||||||||||||||||||||||||||||    
T  47669363 ctaaaacatcaaaagaaaaggaatggagggagta 47669396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 77
Target Start/End: Complemental strand, 1236103 - 1236071
Alignment:
Q  45 ctaaaacatcaaaagaaaaggaatggagggagt 77  Q
    |||||||||||||||||||||||||||||||||    
T  1236103 ctaaaacatcaaaagaaaaggaatggagggagt 1236071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 47 - 78
Target Start/End: Original strand, 48565063 - 48565094
Alignment:
Q  47 aaaacatcaaaagaaaaggaatggagggagta 78  Q
    ||||||||||||||||||||||||||||||||    
T  48565063 aaaacatcaaaagaaaaggaatggagggagta 48565094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 75
Target Start/End: Original strand, 9831747 - 9831777
Alignment:
Q  45 ctaaaacatcaaaagaaaaggaatggaggga 75  Q
    |||||||||||||||||||||||||||||||    
T  9831747 ctaaaacatcaaaagaaaaggaatggaggga 9831777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 78
Target Start/End: Original strand, 8889687 - 8889720
Alignment:
Q  45 ctaaaacatcaaaagaaaaggaatggagggagta 78  Q
    |||||||||||||| |||||||||||||||||||    
T  8889687 ctaaaacatcaaaataaaaggaatggagggagta 8889720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 55
Target Start/End: Complemental strand, 26842503 - 26842462
Alignment:
Q  14 acatcaaaagttttggaatatagttgaagttctaaaacatca 55  Q
    ||||||||  ||||| ||||||||||||||||||||||||||    
T  26842503 acatcaaatattttgaaatatagttgaagttctaaaacatca 26842462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 78
Target Start/End: Original strand, 33023428 - 33023461
Alignment:
Q  45 ctaaaacatcaaaagaaaaggaatggagggagta 78  Q
    ||||||| ||||||||||||||||||||||||||    
T  33023428 ctaaaacgtcaaaagaaaaggaatggagggagta 33023461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 78
Target Start/End: Complemental strand, 37875760 - 37875727
Alignment:
Q  45 ctaaaacatcaaaagaaaaggaatggagggagta 78  Q
    |||||||||||||||||||| |||||||||||||    
T  37875760 ctaaaacatcaaaagaaaagaaatggagggagta 37875727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 3e-29; HSPs: 32)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 14 - 79
Target Start/End: Original strand, 37179544 - 37179609
Alignment:
Q  14 acatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagtac 79  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37179544 acatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagtac 37179609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 14 - 79
Target Start/End: Original strand, 46467548 - 46467613
Alignment:
Q  14 acatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagtac 79  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46467548 acatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagtac 46467613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 17904227 - 17904163
Alignment:
Q  14 acatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagta 78  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17904227 acatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagta 17904163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 29427377 - 29427441
Alignment:
Q  14 acatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagta 78  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29427377 acatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagta 29427441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 14 - 79
Target Start/End: Complemental strand, 26770243 - 26770178
Alignment:
Q  14 acatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagtac 79  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  26770243 acatcaaaagttttggaatttagttgaagttctaaaacatcaaaagaaaaggaatggagggagtac 26770178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 6387905 - 6387969
Alignment:
Q  14 acatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagta 78  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  6387905 acatcaaaagttttggaatatagttgcagttctaaaacatcaaaagaaaaggaatggagggagta 6387969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 14 - 81
Target Start/End: Complemental strand, 6389796 - 6389729
Alignment:
Q  14 acatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagtacat 81  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||    
T  6389796 acatcaaaagttttggaatatagttgaagttctaaaacatcaaaacaaaatgaatggagggagtacat 6389729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 29891039 - 29891103
Alignment:
Q  14 acatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagta 78  Q
    ||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  29891039 acatcaaaaattttggaatatagttgaagttttaaaacatcaaaagaaaaggaatggagggagta 29891103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 14 - 74
Target Start/End: Original strand, 31503150 - 31503210
Alignment:
Q  14 acatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggaggg 74  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  31503150 acatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaacggaggg 31503210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 41922067 - 41922131
Alignment:
Q  14 acatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagta 78  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||    
T  41922067 acatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaagaaatagagggagta 41922131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 14 - 70
Target Start/End: Complemental strand, 9876327 - 9876271
Alignment:
Q  14 acatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatgg 70  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  9876327 acatcaaaagttttggaatatagttgaagttttaaaacatcaaaagaaaaggaatgg 9876271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 14 - 75
Target Start/End: Complemental strand, 9332425 - 9332364
Alignment:
Q  14 acatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggaggga 75  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||  ||||||||||    
T  9332425 acatcaaaagttttgaaatatagttgaagttctaaaacatcaaaagaaaaaaaatggaggga 9332364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 4405173 - 4405109
Alignment:
Q  14 acatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagta 78  Q
    |||||||| ||||| |||||||||||||||| ||||||||||||||||||| |||||||||||||    
T  4405173 acatcaaatgttttagaatatagttgaagttttaaaacatcaaaagaaaagaaatggagggagta 4405109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 12252133 - 12252069
Alignment:
Q  14 acatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagta 78  Q
    ||||||||  ||||||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  12252133 acatcaaatattttggaatatagttgaagttctaaaacatcaaaagaaaaaaaatggagggagta 12252069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 29723019 - 29722955
Alignment:
Q  14 acatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagta 78  Q
    |||||||||||||||||||| |||| ||||||||||| ||||||||||||||||||||| |||||    
T  29723019 acatcaaaagttttggaataaagtttaagttctaaaatatcaaaagaaaaggaatggagagagta 29722955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 43701615 - 43701551
Alignment:
Q  14 acatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagta 78  Q
    ||||||||  |||||||||  |||| |||||||||||||||||||||||||||||||||||||||    
T  43701615 acatcaaattttttggaatgaagtttaagttctaaaacatcaaaagaaaaggaatggagggagta 43701551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 19523908 - 19523974
Alignment:
Q  14 acatcaaaagttttggaatatagttgaagttctaaaacatca--aaagaaaaggaatggagggagta 78  Q
    ||||||||| ||||||||||||||||||||||||||||||||  ||| ||||||||| |||||||||    
T  19523908 acatcaaaaattttggaatatagttgaagttctaaaacatcaacaaaaaaaaggaatagagggagta 19523974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 14 - 81
Target Start/End: Original strand, 33379180 - 33379247
Alignment:
Q  14 acatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagtacat 81  Q
    ||||||||  ||||| |||  |||||||||||||||||||||||||||||| ||||||||||||||||    
T  33379180 acatcaaatattttgaaatcaagttgaagttctaaaacatcaaaagaaaagaaatggagggagtacat 33379247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 24 - 63
Target Start/End: Complemental strand, 46689917 - 46689878
Alignment:
Q  24 ttttggaatatagttgaagttctaaaacatcaaaagaaaa 63  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  46689917 ttttggaatatagttgaagttctaaaacatcaaaagaaaa 46689878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 63
Target Start/End: Original strand, 49011071 - 49011120
Alignment:
Q  14 acatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaa 63  Q
    |||||||| |||||| |||||||||||||| |||||||||||||||||||    
T  49011071 acatcaaatgttttgaaatatagttgaagtcctaaaacatcaaaagaaaa 49011120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 30 - 78
Target Start/End: Original strand, 31858323 - 31858371
Alignment:
Q  30 aatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagta 78  Q
    ||||||||||||||| ||||||||||||||||||  |||||||||||||    
T  31858323 aatatagttgaagttgtaaaacatcaaaagaaaaaaaatggagggagta 31858371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 63
Target Start/End: Complemental strand, 33974545 - 33974506
Alignment:
Q  24 ttttggaatatagttgaagttctaaaacatcaaaagaaaa 63  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  33974545 ttttggaatatagttgaagttcgaaaacatcaaaagaaaa 33974506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 24 - 58
Target Start/End: Original strand, 9215688 - 9215722
Alignment:
Q  24 ttttggaatatagttgaagttctaaaacatcaaaa 58  Q
    |||||||||||||||||||||||||||||||||||    
T  9215688 ttttggaatatagttgaagttctaaaacatcaaaa 9215722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 45 - 79
Target Start/End: Original strand, 29723381 - 29723415
Alignment:
Q  45 ctaaaacatcaaaagaaaaggaatggagggagtac 79  Q
    |||||||||||||||||||||||||||||||||||    
T  29723381 ctaaaacatcaaaagaaaaggaatggagggagtac 29723415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 45 - 79
Target Start/End: Complemental strand, 37179364 - 37179330
Alignment:
Q  45 ctaaaacatcaaaagaaaaggaatggagggagtac 79  Q
    |||||||||||||||||||||||||||||||||||    
T  37179364 ctaaaacatcaaaagaaaaggaatggagggagtac 37179330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 78
Target Start/End: Original strand, 4405353 - 4405386
Alignment:
Q  45 ctaaaacatcaaaagaaaaggaatggagggagta 78  Q
    ||||||||||||||||||||||||||||||||||    
T  4405353 ctaaaacatcaaaagaaaaggaatggagggagta 4405386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 78
Target Start/End: Original strand, 17904407 - 17904440
Alignment:
Q  45 ctaaaacatcaaaagaaaaggaatggagggagta 78  Q
    ||||||||||||||||||||||||||||||||||    
T  17904407 ctaaaacatcaaaagaaaaggaatggagggagta 17904440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 78
Target Start/End: Complemental strand, 29890859 - 29890826
Alignment:
Q  45 ctaaaacatcaaaagaaaaggaatggagggagta 78  Q
    ||||||||||||||||||||||||||||||||||    
T  29890859 ctaaaacatcaaaagaaaaggaatggagggagta 29890826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 78
Target Start/End: Complemental strand, 46467367 - 46467335
Alignment:
Q  46 taaaacatcaaaagaaaaggaatggagggagta 78  Q
    |||||||||||||||||||||||||||||||||    
T  46467367 taaaacatcaaaagaaaaggaatggagggagta 46467335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 79
Target Start/End: Complemental strand, 6387725 - 6387691
Alignment:
Q  45 ctaaaacatcaaaagaaaaggaatggagggagtac 79  Q
    ||||||||||||||||||||||||||||| |||||    
T  6387725 ctaaaacatcaaaagaaaaggaatggaggaagtac 6387691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 165
Target Start/End: Complemental strand, 19736486 - 19736448
Alignment:
Q  127 aacatatataatatttattctcacatgagatgtgtgact 165  Q
    |||||||||||||||||||||||||||| |||| |||||    
T  19736486 aacatatataatatttattctcacatgacatgtatgact 19736448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 78
Target Start/End: Original strand, 26770424 - 26770456
Alignment:
Q  46 taaaacatcaaaagaaaaggaatggagggagta 78  Q
    |||||||||||||||||| ||||||||||||||    
T  26770424 taaaacatcaaaagaaaatgaatggagggagta 26770456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 65; Significance: 1e-28; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 2509009 - 2509073
Alignment:
Q  14 acatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagta 78  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2509009 acatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagta 2509073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 33837942 - 33838006
Alignment:
Q  14 acatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagta 78  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33837942 acatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagta 33838006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 45334489 - 45334553
Alignment:
Q  14 acatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagta 78  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  45334489 acatcaaaagttttggaatatagttaaagttctaaaacatcaaaagaaaaggaatggagggagta 45334553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 16 - 73
Target Start/End: Original strand, 13469720 - 13469777
Alignment:
Q  16 atcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggagg 73  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13469720 atcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggagg 13469777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 25106275 - 25106211
Alignment:
Q  14 acatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagta 78  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  25106275 acatcaaaaattttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggagagagta 25106211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 28379011 - 28378947
Alignment:
Q  14 acatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagta 78  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  28379011 acatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaataatggagggagta 28378947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 9740049 - 9739985
Alignment:
Q  14 acatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagta 78  Q
    ||||||||||||||| ||||||  |||||||||||||||||||||||||||||||||||||||||    
T  9740049 acatcaaaagttttgaaatatacatgaagttctaaaacatcaaaagaaaaggaatggagggagta 9739985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 27024497 - 27024433
Alignment:
Q  14 acatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagta 78  Q
    |||||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||    
T  27024497 acatcaaaagttttggaataaagtttaagctctaaaacatcaaaagaaaaggaatggagggagta 27024433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 27793404 - 27793468
Alignment:
Q  14 acatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagta 78  Q
    |||| |||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||||||    
T  27793404 acattaaaagttttggaatatagttgaagatctaaaacatcaaaagaaaatgaatggaaggagta 27793468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 14 - 79
Target Start/End: Original strand, 38495685 - 38495750
Alignment:
Q  14 acatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagtac 79  Q
    ||||||||| |||| ||||||||||||||||||||||||||| ||||||| ||||||||| |||||    
T  38495685 acatcaaaaattttagaatatagttgaagttctaaaacatcacaagaaaaagaatggaggaagtac 38495750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 25978972 - 25979036
Alignment:
Q  14 acatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagta 78  Q
    |||||||| |||||| |||| ||||||||| |||||||||||||||||||| |||||||||||||    
T  25978972 acatcaaatgttttgaaataaagttgaagtcctaaaacatcaaaagaaaagaaatggagggagta 25979036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 32183695 - 32183759
Alignment:
Q  14 acatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagta 78  Q
    ||||||||  ||||||||||||||||||||||||||||||||||||||||  |||| ||||||||    
T  32183695 acatcaaatattttggaatatagttgaagttctaaaacatcaaaagaaaaaaaatgaagggagta 32183759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 8235226 - 8235162
Alignment:
Q  14 acatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagta 78  Q
    |||||||| |||||| |||| | ||||||| |||||||||||||||||||  |||||||||||||    
T  8235226 acatcaaatgttttgaaataaaattgaagtcctaaaacatcaaaagaaaataaatggagggagta 8235162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 63
Target Start/End: Original strand, 2626667 - 2626714
Alignment:
Q  16 atcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaa 63  Q
    ||||||||||||||||||||||||||||||||||| || |||| ||||    
T  2626667 atcaaaagttttggaatatagttgaagttctaaaatataaaaaaaaaa 2626714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 46 - 80
Target Start/End: Original strand, 9740231 - 9740265
Alignment:
Q  46 taaaacatcaaaagaaaaggaatggagggagtaca 80  Q
    |||||||||||||||||||||||||||||||||||    
T  9740231 taaaacatcaaaagaaaaggaatggagggagtaca 9740265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 129 - 171
Target Start/End: Original strand, 12838951 - 12838993
Alignment:
Q  129 catatataatatttattctcacatgagatgtgtgacttaaaga 171  Q
    |||||||||||||||||||||||||| |||||||||| |||||    
T  12838951 catatataatatttattctcacatgacatgtgtgactcaaaga 12838993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 45 - 79
Target Start/End: Complemental strand, 33837762 - 33837728
Alignment:
Q  45 ctaaaacatcaaaagaaaaggaatggagggagtac 79  Q
    |||||||||||||||||||||||||||||||||||    
T  33837762 ctaaaacatcaaaagaaaaggaatggagggagtac 33837728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 78
Target Start/End: Original strand, 25106455 - 25106488
Alignment:
Q  45 ctaaaacatcaaaagaaaaggaatggagggagta 78  Q
    ||||||||||||||||||||||||||||||||||    
T  25106455 ctaaaacatcaaaagaaaaggaatggagggagta 25106488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 78
Target Start/End: Original strand, 27027655 - 27027688
Alignment:
Q  45 ctaaaacatcaaaagaaaaggaatggagggagta 78  Q
    ||||||||||||||||||||||||||||||||||    
T  27027655 ctaaaacatcaaaagaaaaggaatggagggagta 27027688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 78
Target Start/End: Original strand, 28379191 - 28379224
Alignment:
Q  45 ctaaaacatcaaaagaaaaggaatggagggagta 78  Q
    ||||||||||||||||||||||||||||||||||    
T  28379191 ctaaaacatcaaaagaaaaggaatggagggagta 28379224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 78
Target Start/End: Complemental strand, 45334309 - 45334276
Alignment:
Q  45 ctaaaacatcaaaagaaaaggaatggagggagta 78  Q
    ||||||||||||||||||||||||||||||||||    
T  45334309 ctaaaacatcaaaagaaaaggaatggagggagta 45334276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 79
Target Start/End: Complemental strand, 38495505 - 38495471
Alignment:
Q  45 ctaaaacatcaaaagaaaaggaatggagggagtac 79  Q
    ||||||||||||||||||| |||||||||||||||    
T  38495505 ctaaaacatcaaaagaaaatgaatggagggagtac 38495471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 78
Target Start/End: Complemental strand, 13469540 - 13469508
Alignment:
Q  46 taaaacatcaaaagaaaaggaatggagggagta 78  Q
    |||||||||||||||||||||||||| ||||||    
T  13469540 taaaacatcaaaagaaaaggaatggaaggagta 13469508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 65; Significance: 1e-28; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 32274498 - 32274434
Alignment:
Q  14 acatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagta 78  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32274498 acatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagta 32274434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 27312329 - 27312393
Alignment:
Q  14 acatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagta 78  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27312329 acatcaaatgttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagta 27312393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 14 - 76
Target Start/End: Original strand, 8504915 - 8504977
Alignment:
Q  14 acatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggagggag 76  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||    
T  8504915 acatcaaaagttttgaaatatagttgaagttctaaaacatcaaaagaaaatgaatggagggag 8504977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 12174764 - 12174700
Alignment:
Q  14 acatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagta 78  Q
    |||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||    
T  12174764 acatcaaaagttttggaatatatttaaagttctaaaacattaaaagaaaaggaatggagggagta 12174700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 30 - 78
Target Start/End: Original strand, 29302500 - 29302548
Alignment:
Q  30 aatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagta 78  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  29302500 aatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagta 29302548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 14 - 71
Target Start/End: Complemental strand, 5003946 - 5003889
Alignment:
Q  14 acatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatgga 71  Q
    ||||||||||||||| ||||||||||||||||||||||||||||| |||| |||||||    
T  5003946 acatcaaaagttttgaaatatagttgaagttctaaaacatcaaaaaaaaatgaatgga 5003889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 14 - 79
Target Start/End: Complemental strand, 18742011 - 18741946
Alignment:
Q  14 acatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagtac 79  Q
    |||||||| |||||| |||| ||||||||| |||||||||||||||||||| ||||||||||||||    
T  18742011 acatcaaatgttttgaaataaagttgaagtcctaaaacatcaaaagaaaagaaatggagggagtac 18741946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 7156438 - 7156502
Alignment:
Q  14 acatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagta 78  Q
    ||||| |||||||||||||||||||||   ||||||||||||||||||||| |||||||||||||    
T  7156438 acatctaaagttttggaatatagttgattgtctaaaacatcaaaagaaaagaaatggagggagta 7156502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 29 - 78
Target Start/End: Original strand, 29452771 - 29452820
Alignment:
Q  29 gaatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagta 78  Q
    ||||||||||||||||||||||||||| |||||||| |||||||||||||    
T  29452771 gaatatagttgaagttctaaaacatcagaagaaaagaaatggagggagta 29452820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 14 - 80
Target Start/End: Original strand, 31171203 - 31171269
Alignment:
Q  14 acatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagtaca 80  Q
    ||||| || ||||||||||| | ||||| ||||||| |||||||||||||| |||||||||||||||    
T  31171203 acatctaatgttttggaatacatttgaatttctaaatcatcaaaagaaaagaaatggagggagtaca 31171269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 78
Target Start/End: Complemental strand, 8504766 - 8504733
Alignment:
Q  45 ctaaaacatcaaaagaaaaggaatggagggagta 78  Q
    ||||||||||||||||||||||||||||||||||    
T  8504766 ctaaaacatcaaaagaaaaggaatggagggagta 8504733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 78
Target Start/End: Complemental strand, 27312147 - 27312114
Alignment:
Q  45 ctaaaacatcaaaagaaaaggaatggagggagta 78  Q
    ||||||||||||||||||||||||||||||||||    
T  27312147 ctaaaacatcaaaagaaaaggaatggagggagta 27312114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 78
Target Start/End: Original strand, 2543325 - 2543358
Alignment:
Q  45 ctaaaacatcaaaagaaaaggaatggagggagta 78  Q
    ||||||||||||||||||| ||||||||||||||    
T  2543325 ctaaaacatcaaaagaaaacgaatggagggagta 2543358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 78
Target Start/End: Original strand, 32274678 - 32274711
Alignment:
Q  45 ctaaaacatcaaaagaaaaggaatggagggagta 78  Q
    ||||||||||||||||||| ||||||||||||||    
T  32274678 ctaaaacatcaaaagaaaatgaatggagggagta 32274711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 78
Target Start/End: Original strand, 18742191 - 18742223
Alignment:
Q  46 taaaacatcaaaagaaaaggaatggagggagta 78  Q
    ||||||||||||||||||| |||||||||||||    
T  18742191 taaaacatcaaaagaaaagaaatggagggagta 18742223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 1e-28; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 12399159 - 12399223
Alignment:
Q  14 acatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagta 78  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12399159 acatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagta 12399223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 34208602 - 34208538
Alignment:
Q  14 acatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagta 78  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34208602 acatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagta 34208538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 4145758 - 4145694
Alignment:
Q  14 acatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagta 78  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||    
T  4145758 acatcaaaagttttggaatatagttaaagttctaaaacatcaaaagaaaaggaatggagcgagta 4145694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 23090362 - 23090298
Alignment:
Q  14 acatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagta 78  Q
    ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  23090362 acatcaaaaattttggaatacagttgaagttctaaaacatcaaaagaaaaggaatggagggagta 23090298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 29875018 - 29874954
Alignment:
Q  14 acatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagta 78  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  29875018 acatcaaatgttttggaatatagttgaagttctaaaacatcaaaagaaaaagaatggagggagta 29874954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 14 - 79
Target Start/End: Original strand, 4695375 - 4695440
Alignment:
Q  14 acatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagtac 79  Q
    ||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||||||    
T  4695375 acatcaaaagttttgaaatatagttgaagttctaaaaaatcaaaagaaaaggaatgaagggagtac 4695440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 14 - 79
Target Start/End: Complemental strand, 42793104 - 42793039
Alignment:
Q  14 acatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagtac 79  Q
    |||||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||| ||||||    
T  42793104 acatcaaaagttttggaataaagtttaagctctaaaacatcaaaagaaaaggaatggagtgagtac 42793039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 3077661 - 3077597
Alignment:
Q  14 acatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagta 78  Q
    ||||||||||||||  |||||||||||| ||||||||||||||||||||| ||||||||||||||    
T  3077661 acatcaaaagttttaaaatatagttgaaattctaaaacatcaaaagaaaatgaatggagggagta 3077597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 41610630 - 41610694
Alignment:
Q  14 acatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagta 78  Q
    |||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||| |||||    
T  41610630 acatcaaaagttttggaataaagtttaagttctaaaacatcaaaagaaaagaaatggagagagta 41610694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 14 - 63
Target Start/End: Original strand, 12096417 - 12096466
Alignment:
Q  14 acatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaa 63  Q
    |||||||| ||||||||||||||||||||| |||||||||||||||||||    
T  12096417 acatcaaatgttttggaatatagttgaagtcctaaaacatcaaaagaaaa 12096466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 80
Target Start/End: Complemental strand, 42757838 - 42757803
Alignment:
Q  45 ctaaaacatcaaaagaaaaggaatggagggagtaca 80  Q
    ||||||||||||||||||||||||||||||||||||    
T  42757838 ctaaaacatcaaaagaaaaggaatggagggagtaca 42757803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 45 - 79
Target Start/End: Complemental strand, 12398979 - 12398945
Alignment:
Q  45 ctaaaacatcaaaagaaaaggaatggagggagtac 79  Q
    |||||||||||||||||||||||||||||||||||    
T  12398979 ctaaaacatcaaaagaaaaggaatggagggagtac 12398945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 30 - 75
Target Start/End: Complemental strand, 4434828 - 4434783
Alignment:
Q  30 aatatagttgaagttctaaaacatcaaaagaaaaggaatggaggga 75  Q
    |||| ||||||||| |||||||||||||||||||| ||||||||||    
T  4434828 aataaagttgaagtcctaaaacatcaaaagaaaagaaatggaggga 4434783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 78
Target Start/End: Original strand, 29875198 - 29875231
Alignment:
Q  45 ctaaaacatcaaaagaaaaggaatggagggagta 78  Q
    ||||||||||||||||||||||||||||||||||    
T  29875198 ctaaaacatcaaaagaaaaggaatggagggagta 29875231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 63
Target Start/End: Original strand, 42758023 - 42758072
Alignment:
Q  14 acatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaa 63  Q
    ||||||||||||||| || ||||||||||||||||||||| |||| ||||    
T  42758023 acatcaaaagttttgaaaaatagttgaagttctaaaacataaaaaaaaaa 42758072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 78
Target Start/End: Original strand, 42793562 - 42793595
Alignment:
Q  45 ctaaaacatcaaaagaaaaggaatggagggagta 78  Q
    ||||||||||||||||||||||||||||||||||    
T  42793562 ctaaaacatcaaaagaaaaggaatggagggagta 42793595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 78
Target Start/End: Original strand, 23090543 - 23090575
Alignment:
Q  46 taaaacatcaaaagaaaaggaatggagggagta 78  Q
    |||||||||||||||||||||||||||||||||    
T  23090543 taaaacatcaaaagaaaaggaatggagggagta 23090575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 78
Target Start/End: Complemental strand, 41610405 - 41610373
Alignment:
Q  46 taaaacatcaaaagaaaaggaatggagggagta 78  Q
    |||||||||||||||||||||||||||||||||    
T  41610405 taaaacatcaaaagaaaaggaatggagggagta 41610373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 63
Target Start/End: Original strand, 594328 - 594362
Alignment:
Q  29 gaatatagttgaagttctaaaacatcaaaagaaaa 63  Q
    |||||||||||||||| ||||||||||||||||||    
T  594328 gaatatagttgaagttttaaaacatcaaaagaaaa 594362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 129 - 206
Target Start/End: Complemental strand, 21750742 - 21750665
Alignment:
Q  129 catatataatatttattctcacatgagatgtgtgacttaaagagtcgtacttgatatataaagaatgaaggagatata 206  Q
    ||||||||||||| ||||||| |||| || | |||||| ||||||| || ||||||  | ||||||||| ||||||||    
T  21750742 catatataatattgattctcatatgacatctatgacttcaagagtcatatttgatacgtgaagaatgaatgagatata 21750665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 78
Target Start/End: Original strand, 34208782 - 34208815
Alignment:
Q  45 ctaaaacatcaaaagaaaaggaatggagggagta 78  Q
    |||||||||||||| |||||||||||||||||||    
T  34208782 ctaaaacatcaaaaaaaaaggaatggagggagta 34208815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 34)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 1352209 - 1352273
Alignment:
Q  14 acatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagta 78  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1352209 acatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagta 1352273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 18997031 - 18996967
Alignment:
Q  14 acatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagta 78  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18997031 acatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagta 18996967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 18999570 - 18999506
Alignment:
Q  14 acatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagta 78  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18999570 acatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagta 18999506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 29371751 - 29371815
Alignment:
Q  14 acatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagta 78  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29371751 acatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagta 29371815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 39528813 - 39528749
Alignment:
Q  14 acatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagta 78  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39528813 acatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagta 39528749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 28228500 - 28228436
Alignment:
Q  14 acatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagta 78  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  28228500 acatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggagagagta 28228436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 32677690 - 32677754
Alignment:
Q  14 acatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagta 78  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  32677690 acatcaaaagttttggtatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagta 32677754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 41349584 - 41349648
Alignment:
Q  14 acatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagta 78  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41349584 acatcaaaagttttagaatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagta 41349648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 39807192 - 39807256
Alignment:
Q  14 acatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagta 78  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  39807192 acatcaaaagttttgtaatatagttgaagttctaaaacatcaaaagaaaaggaatggaggaagta 39807256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 14 - 75
Target Start/End: Complemental strand, 21974213 - 21974152
Alignment:
Q  14 acatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggaggga 75  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||    
T  21974213 acatcaaaagttttggaatatagttgaaattctaaaacatcaaaagaaaagaaatggaggga 21974152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 14 - 75
Target Start/End: Complemental strand, 21996644 - 21996583
Alignment:
Q  14 acatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggaggga 75  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||    
T  21996644 acatcaaaagttttggaatatagttgaaattctaaaacatcaaaagaaaagaaatggaggga 21996583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 22157320 - 22157261
Alignment:
Q  16 atcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggaggga 75  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||    
T  22157320 atcaaaagttttagaatatagttgaagttctaaaacatcaaaagaaaagaaatggaggga 22157261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 14 - 72
Target Start/End: Complemental strand, 38855381 - 38855323
Alignment:
Q  14 acatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggag 72  Q
    ||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||    
T  38855381 acatcaaaagttttggaatatagttgatgttttaaaacatcaaaagaaaaggaatggag 38855323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 55365972 - 55365908
Alignment:
Q  14 acatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagta 78  Q
    |||||||||  |||| |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  55365972 acatcaaaaaatttgaaatatagttgaagttctaaaacatcaaaagaaaaggaatgaagggagta 55365908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 14 - 71
Target Start/End: Original strand, 29014903 - 29014960
Alignment:
Q  14 acatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatgga 71  Q
    |||||||||||||||||||||||||||||||||||||||| |||| |||| |||||||    
T  29014903 acatcaaaagttttggaatatagttgaagttctaaaacataaaaaaaaaaagaatgga 29014960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 36738047 - 36738111
Alignment:
Q  14 acatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagta 78  Q
    ||||||||||||||  ||||||||| |||||||||||||||||||||||||||||| | ||||||    
T  36738047 acatcaaaagttttaaaatatagttaaagttctaaaacatcaaaagaaaaggaatgaatggagta 36738111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 14 - 79
Target Start/End: Complemental strand, 49319411 - 49319346
Alignment:
Q  14 acatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagtac 79  Q
    ||||||||| |||| ||||  |||| |||||||||||||||||||||||||||||||||| |||||    
T  49319411 acatcaaaatttttagaatgaagtttaagttctaaaacatcaaaagaaaaggaatggaggaagtac 49319346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 30 - 79
Target Start/End: Complemental strand, 32839997 - 32839948
Alignment:
Q  30 aatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagtac 79  Q
    ||||||||||||||||||||| || ||||||||| |||||||||||||||    
T  32839997 aatatagttgaagttctaaaatataaaaagaaaatgaatggagggagtac 32839948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 63
Target Start/End: Original strand, 49041058 - 49041107
Alignment:
Q  14 acatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaa 63  Q
    ||||||||  |||||||| |||||||||||||||||||||||||||||||    
T  49041058 acatcaaatattttggaacatagttgaagttctaaaacatcaaaagaaaa 49041107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 63
Target Start/End: Complemental strand, 39518469 - 39518422
Alignment:
Q  16 atcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaa 63  Q
    ||||||||||||| ||||||||||||||| ||||||||||||| ||||    
T  39518469 atcaaaagttttgaaatatagttgaagttttaaaacatcaaaaaaaaa 39518422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 80
Target Start/End: Original strand, 39528993 - 39529028
Alignment:
Q  45 ctaaaacatcaaaagaaaaggaatggagggagtaca 80  Q
    ||||||||||||||||||||||||||||||||||||    
T  39528993 ctaaaacatcaaaagaaaaggaatggagggagtaca 39529028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 45 - 79
Target Start/End: Complemental strand, 1352029 - 1351995
Alignment:
Q  45 ctaaaacatcaaaagaaaaggaatggagggagtac 79  Q
    |||||||||||||||||||||||||||||||||||    
T  1352029 ctaaaacatcaaaagaaaaggaatggagggagtac 1351995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 78
Target Start/End: Original strand, 18997211 - 18997244
Alignment:
Q  45 ctaaaacatcaaaagaaaaggaatggagggagta 78  Q
    ||||||||||||||||||||||||||||||||||    
T  18997211 ctaaaacatcaaaagaaaaggaatggagggagta 18997244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 78
Target Start/End: Original strand, 18999750 - 18999783
Alignment:
Q  45 ctaaaacatcaaaagaaaaggaatggagggagta 78  Q
    ||||||||||||||||||||||||||||||||||    
T  18999750 ctaaaacatcaaaagaaaaggaatggagggagta 18999783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 78
Target Start/End: Complemental strand, 29014723 - 29014690
Alignment:
Q  45 ctaaaacatcaaaagaaaaggaatggagggagta 78  Q
    ||||||||||||||||||||||||||||||||||    
T  29014723 ctaaaacatcaaaagaaaaggaatggagggagta 29014690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 78
Target Start/End: Complemental strand, 36737867 - 36737834
Alignment:
Q  45 ctaaaacatcaaaagaaaaggaatggagggagta 78  Q
    ||||||||||||||||||||||||||||||||||    
T  36737867 ctaaaacatcaaaagaaaaggaatggagggagta 36737834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 78
Target Start/End: Original strand, 38855561 - 38855594
Alignment:
Q  45 ctaaaacatcaaaagaaaaggaatggagggagta 78  Q
    ||||||||||||||||||||||||||||||||||    
T  38855561 ctaaaacatcaaaagaaaaggaatggagggagta 38855594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 78
Target Start/End: Original strand, 39518651 - 39518684
Alignment:
Q  45 ctaaaacatcaaaagaaaaggaatggagggagta 78  Q
    ||||||||||||||||||||||||||||||||||    
T  39518651 ctaaaacatcaaaagaaaaggaatggagggagta 39518684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 78
Target Start/End: Complemental strand, 41349404 - 41349371
Alignment:
Q  45 ctaaaacatcaaaagaaaaggaatggagggagta 78  Q
    ||||||||||||||||||||||||||||||||||    
T  41349404 ctaaaacatcaaaagaaaaggaatggagggagta 41349371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 78
Target Start/End: Original strand, 46878980 - 46879012
Alignment:
Q  46 taaaacatcaaaagaaaaggaatggagggagta 78  Q
    |||||||||||||||||||||||||||||||||    
T  46878980 taaaacatcaaaagaaaaggaatggagggagta 46879012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 78
Target Start/End: Complemental strand, 29371571 - 29371538
Alignment:
Q  45 ctaaaacatcaaaagaaaaggaatggagggagta 78  Q
    ||||||||||||||||||| ||||||||||||||    
T  29371571 ctaaaacatcaaaagaaaatgaatggagggagta 29371538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 78
Target Start/End: Complemental strand, 32677510 - 32677477
Alignment:
Q  45 ctaaaacatcaaaagaaaaggaatggagggagta 78  Q
    ||||||||||||||||||| ||||||||||||||    
T  32677510 ctaaaacatcaaaagaaaatgaatggagggagta 32677477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 127 - 200
Target Start/End: Complemental strand, 32933440 - 32933367
Alignment:
Q  127 aacatatataatatttattctcacatgagatgtgtgacttaaagagtcgtacttgatatataaagaatgaagga 200  Q
    ||||||||||||||||||| |||||||| |||  ||||||||| | || || || |||||| || |||||||||    
T  32933440 aacatatataatatttattttcacatgatatgcatgacttaaaaactcatatttaatatatgaaaaatgaagga 32933367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 78
Target Start/End: Complemental strand, 39807012 - 39806979
Alignment:
Q  45 ctaaaacatcaaaagaaaaggaatggagggagta 78  Q
    ||||||||||||||||||||||||| ||||||||    
T  39807012 ctaaaacatcaaaagaaaaggaatgaagggagta 39806979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 30469381 - 30469445
Alignment:
Q  14 acatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagta 78  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  30469381 acatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatgaagggagta 30469445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 8955989 - 8956053
Alignment:
Q  14 acatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagta 78  Q
    ||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||    
T  8955989 acatcaaaagttttgtaatatagttgaagttctaaaacatcaaaaaaaaaggaatggagggagta 8956053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 45590806 - 45590742
Alignment:
Q  14 acatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagta 78  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  45590806 acatcaaaagttttagaatatagttgaagttctaaaacatcaaaagaaaatgaatggagggagta 45590742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 15 - 68
Target Start/End: Complemental strand, 34334395 - 34334342
Alignment:
Q  15 catcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaat 68  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34334395 catcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaat 34334342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 14 - 75
Target Start/End: Complemental strand, 39481967 - 39481906
Alignment:
Q  14 acatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggaggga 75  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||    
T  39481967 acatcaaaagttttggaaaatagttgaagttctaaaacatcaaaagaaaagaaatggaggga 39481906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 19256250 - 19256186
Alignment:
Q  14 acatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagta 78  Q
    |||||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||    
T  19256250 acatcaaaagttttggaataaagtttaagctctaaaacatcaaaagaaaaggaatggagggagta 19256186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 33288618 - 33288682
Alignment:
Q  14 acatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagta 78  Q
    |||||||||||||||||||||| |||||||||||||| ||||||||||||| |||||||||||||    
T  33288618 acatcaaaagttttggaatataattgaagttctaaaatatcaaaagaaaagaaatggagggagta 33288682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 28 - 78
Target Start/End: Complemental strand, 36016329 - 36016279
Alignment:
Q  28 ggaatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagta 78  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36016329 ggaatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagta 36016279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 14 - 79
Target Start/End: Complemental strand, 18835769 - 18835704
Alignment:
Q  14 acatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagtac 79  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||  |||| |||||||||    
T  18835769 acatcgaaagttttggaatatagttgaagttctaaaacatcaaaagaaaataaatgaagggagtac 18835704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 14 - 72
Target Start/End: Complemental strand, 49162166 - 49162108
Alignment:
Q  14 acatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggag 72  Q
    ||||||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||    
T  49162166 acatcaaaaattttggaatatagttgaagttctgaaacatcaaaagaaaatgaatggag 49162108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 14 - 63
Target Start/End: Complemental strand, 36968402 - 36968353
Alignment:
Q  14 acatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaa 63  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  36968402 acatcaaaagttttggaatatagttgaagttctaaaacatcaaaaaaaaa 36968353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 63
Target Start/End: Original strand, 26025745 - 26025784
Alignment:
Q  24 ttttggaatatagttgaagttctaaaacatcaaaagaaaa 63  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  26025745 ttttggaatatagttgaagtcctaaaacatcaaaagaaaa 26025784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 63
Target Start/End: Original strand, 50774278 - 50774325
Alignment:
Q  16 atcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaa 63  Q
    ||||||||||||| ||||||||| ||||||||||||||||||| ||||    
T  50774278 atcaaaagttttgaaatatagttaaagttctaaaacatcaaaaaaaaa 50774325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 44 - 78
Target Start/End: Original strand, 19257103 - 19257137
Alignment:
Q  44 tctaaaacatcaaaagaaaaggaatggagggagta 78  Q
    |||||||||||||||||||||||||||||||||||    
T  19257103 tctaaaacatcaaaagaaaaggaatggagggagta 19257137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 75
Target Start/End: Complemental strand, 8955809 - 8955779
Alignment:
Q  45 ctaaaacatcaaaagaaaaggaatggaggga 75  Q
    |||||||||||||||||||||||||||||||    
T  8955809 ctaaaacatcaaaagaaaaggaatggaggga 8955779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 78
Target Start/End: Original strand, 45590986 - 45591019
Alignment:
Q  45 ctaaaacatcaaaagaaaaggaatggagggagta 78  Q
    ||||||||||||||||||| ||||||||||||||    
T  45590986 ctaaaacatcaaaagaaaatgaatggagggagta 45591019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 78
Target Start/End: Original strand, 49162332 - 49162365
Alignment:
Q  45 ctaaaacatcaaaagaaaaggaatggagggagta 78  Q
    |||||||||||||||||| |||||||||||||||    
T  49162332 ctaaaacatcaaaagaaagggaatggagggagta 49162365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 77
Target Start/End: Original strand, 39482106 - 39482138
Alignment:
Q  45 ctaaaacatcaaaagaaaaggaatggagggagt 77  Q
    |||||||||||||||||||| ||||||||||||    
T  39482106 ctaaaacatcaaaagaaaagaaatggagggagt 39482138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 3e-26; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 35793119 - 35793183
Alignment:
Q  14 acatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagta 78  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  35793119 acatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaagaatggagggagta 35793183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 43041062 - 43041126
Alignment:
Q  14 acatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagta 78  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  43041062 acatcaaaagttttggaatatagttgaagttttaaaacatcaaaagaaaaggaatggagggagta 43041126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 14 - 76
Target Start/End: Complemental strand, 15233819 - 15233757
Alignment:
Q  14 acatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggagggag 76  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  15233819 acatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatagagggag 15233757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 14 - 79
Target Start/End: Original strand, 44104769 - 44104834
Alignment:
Q  14 acatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagtac 79  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||    
T  44104769 acatcaaaagttttgaaatatagttgaagttctaaaacatcaaaagaaaaggaacggagggagtac 44104834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 41252479 - 41252415
Alignment:
Q  14 acatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagta 78  Q
    |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  41252479 acatcaaaagttttggaatatatttgaagttctaaaacataaaaagaaaaggaatggagggagta 41252415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 31296147 - 31296083
Alignment:
Q  14 acatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagta 78  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| ||||||    
T  31296147 acatcaaaagttttagaatatagttgaagttctaaaacatcaaaagaaaaagaatggaaggagta 31296083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 10118665 - 10118729
Alignment:
Q  14 acatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagta 78  Q
    |||||||||||||||||||| |||| ||| ||||||| |||||||||||||||||||||||||||    
T  10118665 acatcaaaagttttggaataaagtttaagctctaaaatatcaaaagaaaaggaatggagggagta 10118729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 41642958 - 41642891
Alignment:
Q  14 acatcaaaagttttggaatata--gttgaagttctaaaa-catcaaaagaaaaggaatggagggagta 78  Q
    ||||||||||||||||||||||  |||||| |||||||| |||||||||||||| |||||||||||||    
T  41642958 acatcaaaagttttggaatatatagttgaaattctaaaaacatcaaaagaaaagaaatggagggagta 41642891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 63
Target Start/End: Complemental strand, 21727733 - 21727684
Alignment:
Q  14 acatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaa 63  Q
    ||||||||  ||||| ||||||||||||||||||||||||||||||||||    
T  21727733 acatcaaatattttgaaatatagttgaagttctaaaacatcaaaagaaaa 21727684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 45 - 79
Target Start/End: Complemental strand, 43040882 - 43040848
Alignment:
Q  45 ctaaaacatcaaaagaaaaggaatggagggagtac 79  Q
    |||||||||||||||||||||||||||||||||||    
T  43040882 ctaaaacatcaaaagaaaaggaatggagggagtac 43040848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 78
Target Start/End: Complemental strand, 10112372 - 10112339
Alignment:
Q  45 ctaaaacatcaaaagaaaaggaatggagggagta 78  Q
    ||||||||||||||||||||||||||||||||||    
T  10112372 ctaaaacatcaaaagaaaaggaatggagggagta 10112339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 78
Target Start/End: Original strand, 15233999 - 15234032
Alignment:
Q  45 ctaaaacatcaaaagaaaaggaatggagggagta 78  Q
    ||||||||||||||||||||||||||||||||||    
T  15233999 ctaaaacatcaaaagaaaaggaatggagggagta 15234032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 63
Target Start/End: Original strand, 31903592 - 31903641
Alignment:
Q  14 acatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaa 63  Q
    |||||||||  ||||||||||| |||||||||||||||||||||| ||||    
T  31903592 acatcaaaaaatttggaatatatttgaagttctaaaacatcaaaaaaaaa 31903641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 78
Target Start/End: Complemental strand, 44104578 - 44104546
Alignment:
Q  46 taaaacatcaaaagaaaaggaatggagggagta 78  Q
    |||||||||||||||||||||||||||||||||    
T  44104578 taaaacatcaaaagaaaaggaatggagggagta 44104546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 165
Target Start/End: Complemental strand, 3048319 - 3048281
Alignment:
Q  127 aacatatataatatttattctcacatgagatgtgtgact 165  Q
    |||||||||||||||||||||||||||| |||| |||||    
T  3048319 aacatatataatatttattctcacatgacatgtatgact 3048281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 36963195 - 36963131
Alignment:
Q  14 acatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagta 78  Q
    ||||||||  ||||| |||| |||| || ||||||||||| |||||||||||||| ||| |||||    
T  36963195 acatcaaattttttgaaataaagtttaaattctaaaacattaaaagaaaaggaatagagcgagta 36963131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 17 - 78
Target Start/End: Complemental strand, 44681 - 44619
Alignment:
Q  17 tcaaaagttttggaatatagttgaagttctaaaacatca-aaagaaaaggaatggagggagta 78  Q
    |||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||    
T  44681 tcaaaagttttggaatatagttgaagttctcaaacatcagaaagaaaaggaatgaagggagta 44619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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