View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11386A_low_367 (Length: 243)

Name: NF11386A_low_367
Description: NF11386A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11386A_low_367
NF11386A_low_367
[»] chr3 (1 HSPs)
chr3 (44-164)||(34948721-34948844)
[»] chr4 (2 HSPs)
chr4 (168-223)||(37029534-37029589)
chr4 (79-164)||(48292031-48292117)
[»] chr8 (3 HSPs)
chr8 (67-112)||(5726462-5726507)
chr8 (75-151)||(11630665-11630741)
chr8 (127-164)||(5726424-5726461)
[»] chr7 (3 HSPs)
chr7 (128-164)||(16650621-16650657)
chr7 (128-164)||(17624981-17625017)
chr7 (79-164)||(40066729-40066808)
[»] chr2 (1 HSPs)
chr2 (75-147)||(10376365-10376437)
[»] chr1 (1 HSPs)
chr1 (128-169)||(38114049-38114090)
[»] chr6 (1 HSPs)
chr6 (61-151)||(12798612-12798701)


Alignment Details
Target: chr3 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 44 - 164
Target Start/End: Complemental strand, 34948844 - 34948721
Alignment:
Q  44 ggaacaaaagaatgtaaaggttatattttata---tattattttggttgaagaagacaaaataaattgtcacgtggcagtggtgtatggggtggatgaat 140  Q
    |||||||||||||| ||| |||||||||||||   ||||||||||||||||||||||||||||||||| ||| |||||||||||||| ||||| ||||||    
T  34948844 ggaacaaaagaatggaaatgttatattttatactatattattttggttgaagaagacaaaataaattgccacatggcagtggtgtatagggtgaatgaat 34948745  T
Q  141 taaaagggtgttcatcaatcttta 164  Q
    ||||||||||||||||||||||||    
T  34948744 taaaagggtgttcatcaatcttta 34948721  T

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Target: chr4 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 168 - 223
Target Start/End: Complemental strand, 37029589 - 37029534
Alignment:
Q  168 aatttgataccacaatatcatgttgtccatcgtgtcgatttggagtaacttcaatg 223  Q
    ||||| |||||||||||||||||||||||||||||| |||||||||||||||||||    
T  37029589 aatttcataccacaatatcatgttgtccatcgtgtctatttggagtaacttcaatg 37029534  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 79 - 164
Target Start/End: Original strand, 48292031 - 48292117
Alignment:
Q  79 tattttggttgaagaagacaaaataaat---tgtcacgtggcagtggtgtatggggtggatgaattaaaagggtgttcatcaatcttta 164  Q
    ||||||||||||||||||||||| |||    || ||||| ||||||||  | ||| |||||||||||||||||||||||||||||||||    
T  48292031 tattttggttgaagaagacaaaaaaaaaaactgccacgtagcagtggt--acgggatggatgaattaaaagggtgttcatcaatcttta 48292117  T

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Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 67 - 112
Target Start/End: Complemental strand, 5726507 - 5726462
Alignment:
Q  67 tattttatatattattttggttgaagaagacaaaataaattgtcac 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  5726507 tattttatatattattttggttgaagaagacaaaataaattgtcac 5726462  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 75 - 151
Target Start/End: Original strand, 11630665 - 11630741
Alignment:
Q  75 atattattttggttgaagaagacaaaataaattgtcac-gtggcagtggtgtatggggtggatgaattaaaagggtgt 151  Q
    ||||||||||| ||||| ||||||||| |||||| ||| |||| ||||||||| |||||||||| |||||||||||||    
T  11630665 atattattttgtttgaataagacaaaaaaaattgccacagtgg-agtggtgtaaggggtggatggattaaaagggtgt 11630741  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 127 - 164
Target Start/End: Complemental strand, 5726461 - 5726424
Alignment:
Q  127 tggggtggatgaattaaaagggtgttcatcaatcttta 164  Q
    |||||||  |||||||||||||||||||||||||||||    
T  5726461 tggggtgattgaattaaaagggtgttcatcaatcttta 5726424  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 128 - 164
Target Start/End: Original strand, 16650621 - 16650657
Alignment:
Q  128 ggggtggatgaattaaaagggtgttcatcaatcttta 164  Q
    |||||||||||||||||||||||||||||||||||||    
T  16650621 ggggtggatgaattaaaagggtgttcatcaatcttta 16650657  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 128 - 164
Target Start/End: Original strand, 17624981 - 17625017
Alignment:
Q  128 ggggtggatgaattaaaagggtgttcatcaatcttta 164  Q
    |||||||||||||||||||||||||||||||||||||    
T  17624981 ggggtggatgaattaaaagggtgttcatcaatcttta 17625017  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 79 - 164
Target Start/End: Original strand, 40066729 - 40066808
Alignment:
Q  79 tattttggttgaagaagacaaaataaattgtcacgtggcagtggtgtatggggtggatgaattaaaagggtgttcatcaatcttta 164  Q
    ||||||||||||||||    ||| ||| || ||||| ||||||||  |||| ||||||||||||||||| ||||||||||||||||    
T  40066729 tattttggttgaagaa----aaaaaaaatgccacgtagcagtggt--atggagtggatgaattaaaaggttgttcatcaatcttta 40066808  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 75 - 147
Target Start/End: Original strand, 10376365 - 10376437
Alignment:
Q  75 atattattttggttgaagaagacaaaataaattgtcac-gtggcagtggtgtatggggtggatgaattaaaagg 147  Q
    ||||||||||| ||||| ||||||||| |||||| ||| |||| ||||||||| |||||||||| |||||||||    
T  10376365 atattattttgtttgaataagacaaaaaaaattgccacagtgg-agtggtgtaaggggtggatggattaaaagg 10376437  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 128 - 169
Target Start/End: Original strand, 38114049 - 38114090
Alignment:
Q  128 ggggtggatgaattaaaagggtgttcatcaatctttatccaa 169  Q
    |||||||||||||||||||||||||||||||| |||| ||||    
T  38114049 ggggtggatgaattaaaagggtgttcatcaatttttacccaa 38114090  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 151
Target Start/End: Original strand, 12798612 - 12798701
Alignment:
Q  61 aggttatattttatatattattttggttgaagaagacaaaataaa-ttgtcac-gtggcagtggtgtatggggtggatgaattaaaagggtgt 151  Q
    ||||||||||||||||  ||||||| ||||| ||||||||| ||| ||||||  |||| ||||||||| ||| |||||| |||||||||||||    
T  12798612 aggttatattttatat--tattttgtttgaataagacaaaaaaaaattgtcatagtgg-agtggtgtaagggatggatggattaaaagggtgt 12798701  T

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