View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11386A_low_368 (Length: 242)
Name: NF11386A_low_368
Description: NF11386A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11386A_low_368 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
| [»] chr3 (2 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 18 - 242
Target Start/End: Original strand, 41658203 - 41658427
Alignment:
| Q |
18 |
caatatcatcttgtagaaggacagtgattgatgttatatcagaatgaggacttactcctgatactagttcaggttcaggacaagctgggtagtaaacaaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
41658203 |
caatatcatcttgtagaaggacagtgattgatgttatatcagaatgaggacttactcctgatactagttcaggtgcaggacaagctgggtagtaaacaaa |
41658302 |
T |
|
| Q |
118 |
gcctaatgacatcgtatccattaaggcgtgttctcnnnnnnngcctaactccttcacattcagtttcttaagaagcacttttagcaattttctaataaaa |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41658303 |
gcctaatgacatcgtatccattaaggcgtgttctctttctctgcctaactccttcacattcaatttcttaagaagcacttttagcaattttctaataaaa |
41658402 |
T |
|
| Q |
218 |
gcttcagcatatttcatatattcta |
242 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
41658403 |
gcttcagcatatttcatatattcta |
41658427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 136; Significance: 5e-71; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 18 - 242
Target Start/End: Original strand, 14628506 - 14628730
Alignment:
| Q |
18 |
caatatcatcttgtagaaggacagtgattgatgttatatcagaatgaggacttactcctgatactagttcaggttcaggacaagctgggtagtaaacaaa |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |||||||||||||||||||| ||||||||| || |
|
|
| T |
14628506 |
caatatcatcttgtagaaggacagtgattgatgatatatcagaatgaggacctactcctgatacaagttcaggttcaggacaagcagggtagtaattgaa |
14628605 |
T |
|
| Q |
118 |
gcctaatgacatcgtatccattaaggcgtgttctcnnnnnnngcctaactccttcacattcagtttcttaagaagcacttttagcaattttctaataaaa |
217 |
Q |
| |
|
||||||| ||| | | ||||||| |||| ||||| | ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
14628606 |
gcctaatatcattgcacccattaacgcgtattctctttctttgtctaactccttcacattcagtttcttaagaagcacttttagcaactttctaataaaa |
14628705 |
T |
|
| Q |
218 |
gcttcagcatatttcatatattcta |
242 |
Q |
| |
|
|| |||||||||||||||||||||| |
|
|
| T |
14628706 |
gcgtcagcatatttcatatattcta |
14628730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 21 - 242
Target Start/End: Original strand, 14644314 - 14644535
Alignment:
| Q |
21 |
tatcatcttgtagaaggacagtgattgatgttatatcagaatgaggacttactcctgatactagttcaggttcaggacaagctgggtagtaaacaaagcc |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |||||||||||||||||||| ||||||||| ||||| |
|
|
| T |
14644314 |
tatcatcttgtagaaggacagtgattgatgatatatcagaatgaggacctactcctgatacaagttcaggttcaggacaagcagggtagtaattgaagcc |
14644413 |
T |
|
| Q |
121 |
taatgacatcgtatccattaaggcgtgttctcnnnnnnngcctaactccttcacattcagtttcttaagaagcacttttagcaattttctaataaaagct |
220 |
Q |
| |
|
|||| ||| | | ||||||| |||||||||| | ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
14644414 |
taatatcattgcacccattaaagcgtgttctctttctttgtctaactcgttcacattcagtttcttaagaagcacttgtagcaattttctaataaaagcg |
14644513 |
T |
|
| Q |
221 |
tcagcatatttcatatattcta |
242 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
14644514 |
tcagcatatttcatatattcta |
14644535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University