View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11386A_low_373 (Length: 242)
Name: NF11386A_low_373
Description: NF11386A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11386A_low_373 |
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Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 14 - 229
Target Start/End: Complemental strand, 54793816 - 54793601
Alignment:
| Q |
14 |
agcatagctacttcaaaaacacagagcatgtctttatggtacatacctcatgtgtatcattcactctgaccactttaaaagggtgccatgctgaattttt |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54793816 |
agcatagctacttcaaaaacacagagcatgtctttatggtacatacctcatgggtatcattcactctgaccactttaaaagggtgccatgctgaattttt |
54793717 |
T |
|
| Q |
114 |
cacattctcctgccaaacagagcaaagctccatggccttcatcccagcttcttcttgagaaagaaatcttttcttgcagacttgcacaaaaaccttctca |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
54793716 |
cacattctcctgccaaacagagcaaagctccatggccttcatcccagcttcttcttgagaaacaaatcttttcttgcagacttgcacaaaaaccttctca |
54793617 |
T |
|
| Q |
214 |
tcaaggtctcccattc |
229 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
54793616 |
tcaaggtctcccattc |
54793601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 15 - 229
Target Start/End: Complemental strand, 52286496 - 52286282
Alignment:
| Q |
15 |
gcatagctacttcaaaaacacagagcatgtctttatggtacatacctcatgtgtatcattcactctgaccactttaaaagggtgccatgctgaatttttc |
114 |
Q |
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||||| ||||| |||||||||||||||||||||||||||||||||| |||| |||||||| ||||||| ||||||||||||||||| |||||||| ||| |
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| T |
52286496 |
gcataactactgcaaaaacacagagcatgtctttatggtacataccacatggctatcattctctctgacgactttaaaagggtgccaagctgaattcttc |
52286397 |
T |
|
| Q |
115 |
acattctcctgccaaacagagcaaagctccatggccttcatcccagcttcttcttgagaaagaaatcttttcttgcagacttgcacaaaaaccttctcat |
214 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||| |||| || |
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| T |
52286396 |
acattctcctgccaaaaagagcaaagctccatggccttcatcccagcttcttcttcagaaagaaatcttttcttgcagacattcacaaaaactttctgat |
52286297 |
T |
|
| Q |
215 |
caaggtctcccattc |
229 |
Q |
| |
|
||||||||||||||| |
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| T |
52286296 |
caaggtctcccattc |
52286282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 14 - 123
Target Start/End: Original strand, 54775823 - 54775932
Alignment:
| Q |
14 |
agcatagctacttcaaaaacacagagcatgtctttatggtacatacctcatgtgtatcattcactctgaccactttaaaagggtgccatgctgaattttt |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54775823 |
agcatagctacttcaaaaacacagagcatgtctttatggtacatacctcatgggtatcattcactctgaccactttaaaagggtgccatgctgaattttt |
54775922 |
T |
|
| Q |
114 |
cacattctcc |
123 |
Q |
| |
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||||| |||| |
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|
| T |
54775923 |
cacatgctcc |
54775932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 18 - 227
Target Start/End: Complemental strand, 801656 - 801450
Alignment:
| Q |
18 |
tagctacttcaaaaacacagagcatgtctttatggtacatacctcatgtgtatcattcactctgaccactttaaaagggtgccatgctgaatttttcaca |
117 |
Q |
| |
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|||| ||| ||||||||||||||||| ||||| |||||||||| | | |||||||| ||||||||||||||||||||||| ||||| || |||||| |
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| T |
801656 |
tagccactccaaaaacacagagcatggctttagggtacataccacggggttatcattctgactgaccactttaaaagggtgccaagctgagttcttcaca |
801557 |
T |
|
| Q |
118 |
ttctcctgccaaacagagcaaagctccatggccttcatcccagcttcttcttgagaaagaaatcttttcttgcagacttgcacaaaaaccttctcatcaa |
217 |
Q |
| |
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|| |||||||| | |||||||||||| | |||||| ||||||||||| || |||| |||||||||||||||| | | |||||||||||||| |||| |
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| T |
801556 |
ttttcctgccataaagagcaaagctcaacggcctttatcccagcttcatc---agaagaaaatcttttcttgcaggcattcacaaaaaccttctggtcaa |
801460 |
T |
|
| Q |
218 |
ggtctcccat |
227 |
Q |
| |
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|||||||||| |
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|
| T |
801459 |
ggtctcccat |
801450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 229
Target Start/End: Original strand, 54775950 - 54775980
Alignment:
| Q |
199 |
acaaaaaccttctcatcaaggtctcccattc |
229 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
54775950 |
acaaaaaccttctcatcaaggtctcccattc |
54775980 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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