View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11386A_low_383 (Length: 241)
Name: NF11386A_low_383
Description: NF11386A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11386A_low_383 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 41103142 - 41103375
Alignment:
| Q |
1 |
gagtctaacctgtgaagcaacgacttgcgatctgatcggtgagtttgattccgacgaaaaaattgattcaatttgattccaattttctgaaatcgcttcg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41103142 |
gagtctaacctgtgaagcaacgacttgcgatctgatcggtgagtttgattccgacgaaaaaattgattcaatttgattccaattttctgaaatcgcttcg |
41103241 |
T |
|
| Q |
101 |
tataaatcaagcgttctgaacattttctccggagttttcttgcattttgccacgttttccgggaatgcaaacagcatcagtgcgctttctctgcaaatat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |
|
|
| T |
41103242 |
tataaatcaagcgttctgaacattttctccggagttttcttgcattttgccacgttttccgggaatgcaaacagcattaatgcgctttctctgcaaatat |
41103341 |
T |
|
| Q |
201 |
cagcgaaacacgattctccgatgttgttcttctc |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
41103342 |
cagcgaaacacgattctccgatgttgttcttctc |
41103375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 86 - 150
Target Start/End: Original strand, 23129044 - 23129108
Alignment:
| Q |
86 |
tctgaaatcgcttcgtataaatcaagcgttctgaacattttctccggagttttcttgcattttgc |
150 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
23129044 |
tctgaaattgcttcgtataaatcaagagttctgaacattttctcaggagttttcttgcattttgc |
23129108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University