View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11386A_low_388 (Length: 240)
Name: NF11386A_low_388
Description: NF11386A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11386A_low_388 |
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Alignment Details
Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 11 - 232
Target Start/End: Original strand, 35557909 - 35558130
Alignment:
| Q |
11 |
aaaagaatcgataataatcaagtaaaattttcaatatcagtcagatccaatagagattgtagcactagaaatgctaccatgactactactatcacaaaga |
110 |
Q |
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| T |
35557909 |
aaaagaatcaataataatcaagtaaaattttcaatatcagtcagatccaatagagattgtagcactagaaatgctaccatgactactactatcacaaaga |
35558008 |
T |
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| Q |
111 |
gtgaaagcacgttccaaattagccacaatatcacttattgttggcctatcttctccttccaaatgcacacaatgcattgcagtatatgacacaagctcca |
210 |
Q |
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| T |
35558009 |
gtgaaagcacgttccaaattagccacaatatcacttattgttggtctatcttttccttccaaatgcacacaatgcattgcagtatatgacacaagctcca |
35558108 |
T |
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| Q |
211 |
ctgcttctgtttcattcatctc |
232 |
Q |
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|||||||||||||||||||||| |
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| T |
35558109 |
ctgcttctgtttcattcatctc |
35558130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 134 - 206
Target Start/End: Original strand, 35555322 - 35555394
Alignment:
| Q |
134 |
cacaatatcacttattgttggcctatcttctccttccaaatgcacacaatgcattgcagtatatgacacaagc |
206 |
Q |
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| T |
35555322 |
cacaatgtcacttattgttggtctatcttttccttccaaatgcacacaatgcattgcagtatatgacacaagc |
35555394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 35555251 - 35555320
Alignment:
| Q |
13 |
aagaatcgataataatcaagtaaaattttcaatatcagtcagatccaatagagattgtagcactagaaatgc |
84 |
Q |
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| T |
35555251 |
aagaatcgataaaaatca--taacattatcaatgtcagtcagatccaatcgagattgtaacacaagaaatgc |
35555320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 184
Target Start/End: Original strand, 31754808 - 31754870
Alignment:
| Q |
122 |
ttccaaattagccacaatatcacttattgttggcctatcttctccttccaaatgcacacaatg |
184 |
Q |
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| T |
31754808 |
ttccaaattagccacaatatcagccatagttggtctatctttcccttccaaattcacacaatg |
31754870 |
T |
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