View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11386A_low_389 (Length: 240)
Name: NF11386A_low_389
Description: NF11386A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11386A_low_389 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 10 - 240
Target Start/End: Complemental strand, 24122461 - 24122231
Alignment:
| Q |
10 |
catagacatctcatttatctcagttattcattttaagaggtgaatttctaaccaccagactatttgaccaaaaaatgaaattgtgtaaaaactacaccca |
109 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24122461 |
catagacatctcacttatctcagttattcattttaagaggtgaatttctaaccaccagactatttgaccaaaaaatgaaattgtgtaaaaactacaccca |
24122362 |
T |
|
| Q |
110 |
aagaaagcatccattttacaagttaataatgatgtattcctaatttgcttatctcaggttaatctgtgatttctatcctatggctgctggaaatttaagt |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24122361 |
aagaaagcatccattttacaagttaataatgatgtattcctaatttgcttatctcaggttaatctgtgatttctatcctatggctgctggaaatttaagt |
24122262 |
T |
|
| Q |
210 |
gattcagttgaacaaggtgacgaagttacct |
240 |
Q |
| |
|
|| |||||||||||||||||||||||||||| |
|
|
| T |
24122261 |
gaatcagttgaacaaggtgacgaagttacct |
24122231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 84
Target Start/End: Original strand, 1861430 - 1861486
Alignment:
| Q |
28 |
ctcagttattcattttaagaggtgaatttctaaccaccagactatttgaccaaaaaa |
84 |
Q |
| |
|
|||| |||||||||||||||||||||||| || |||| |||||| ||||| |||||| |
|
|
| T |
1861430 |
ctcacttattcattttaagaggtgaatttttagccacaagactacttgacaaaaaaa |
1861486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 76
Target Start/End: Original strand, 29484932 - 29484975
Alignment:
| Q |
33 |
ttattcattttaagaggtgaatttctaaccaccagactatttga |
76 |
Q |
| |
|
|||||||||||||||||||||| |||| |||| ||||||||||| |
|
|
| T |
29484932 |
ttattcattttaagaggtgaatatctagccactagactatttga |
29484975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 81
Target Start/End: Complemental strand, 24284261 - 24284213
Alignment:
| Q |
33 |
ttattcattttaagaggtgaatttctaaccaccagactatttgaccaaa |
81 |
Q |
| |
|
|||||||||||||||||||||| |||| |||| || |||||||| |||| |
|
|
| T |
24284261 |
ttattcattttaagaggtgaatgtctagccactaggctatttgaacaaa |
24284213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 87
Target Start/End: Original strand, 2233170 - 2233224
Alignment:
| Q |
33 |
ttattcattttaagaggtgaatttctaaccaccagactatttgaccaaaaaatga |
87 |
Q |
| |
|
|||||||||||||||| ||||||| |||||| | | |||||||||||||||||| |
|
|
| T |
2233170 |
ttattcattttaagagttgaatttttaaccaataaattatttgaccaaaaaatga |
2233224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University