View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11386A_low_395 (Length: 238)
Name: NF11386A_low_395
Description: NF11386A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11386A_low_395 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 33387776 - 33387539
Alignment:
| Q |
1 |
acttgacagtgaaagataaccagatggtacaattgcatccatcaaattgcctggaccacaagcccgagtgggttatctataatgaatatgtttttacgag |
100 |
Q |
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| T |
33387776 |
acttgacagtgaaagataaccagatggtacaattgcatccatcaaattgcctggaccccaagcccgagtgggttatctataatgaatatgtttttacgag |
33387677 |
T |
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| Q |
101 |
tgacaatttcatacgtactgtgacagatatacgtggtgactggttagttgatatagcaccaaattactatgatttgtctaatttcccacggtgtgaagcg |
200 |
Q |
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| T |
33387676 |
tgacaatttcatacgtactgtgacagatatacgtggtgactggttagttgatatagcaccaaattactatgatttgtctaatttcccacggtgtgaagcg |
33387577 |
T |
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| Q |
201 |
aagcaagttcttgacaggctttacaagaaaagagagaa |
238 |
Q |
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| T |
33387576 |
aagcaagttcttgacaggctttacaagaaaagagagaa |
33387539 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 33 - 173
Target Start/End: Original strand, 20817363 - 20817503
Alignment:
| Q |
33 |
ttgcatccatcaaattgcctggaccacaagcccgagtgggttatctataatgaatatgtttttacgagtgacaatttcatacgtactgtgacagatatac |
132 |
Q |
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| T |
20817363 |
ttgcatccatcaaattgcctggaccacaagcctgaatgggttatctataatgaatatgttcttacgagtcgtcatttcatacgtactgtgatggatatac |
20817462 |
T |
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| Q |
133 |
gtggtgactggttagttgatatagcaccaaattactatgat |
173 |
Q |
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| T |
20817463 |
gtggtgaatggttagttgatatagcaccacattaccatgat |
20817503 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 84; Significance: 5e-40; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 25 - 144
Target Start/End: Complemental strand, 38778164 - 38778045
Alignment:
| Q |
25 |
tggtacaattgcatccatcaaattgcctggaccacaagcccgagtgggttatctataatgaatatgtttttacgagtgacaatttcatacgtactgtgac |
124 |
Q |
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||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |||||||| |||||||||||||||||||| |
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| T |
38778164 |
tggtacacttgcatccatcaaattgtctggaccacaagcccgagtgggttatctacaatgaatatgttcttacgagtcggaatttcatacgtactgtgac |
38778065 |
T |
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| Q |
125 |
agatatacgtggtgactggt |
144 |
Q |
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| T |
38778064 |
agatattcgtggtgaatggt |
38778045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 137 - 238
Target Start/End: Complemental strand, 38777402 - 38777301
Alignment:
| Q |
137 |
tgactggttagttgatatagcaccaaattactatgatttgtctaatttcccacggtgtgaagcgaagcaagttcttgacaggctttacaagaaaagagag |
236 |
Q |
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|||| |||| ||||||||||||||| |||||||||||||||||||||| |||| |||||||| |||| |||||||| | ||||||||||||| ||||| |
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| T |
38777402 |
tgacaggttggttgatatagcaccacattactatgatttgtctaattttccacaatgtgaagcaaagcgtgttcttgaaaagctttacaagaaacgagag |
38777303 |
T |
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| Q |
237 |
aa |
238 |
Q |
| |
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|| |
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| T |
38777302 |
aa |
38777301 |
T |
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