View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11386A_low_397 (Length: 238)
Name: NF11386A_low_397
Description: NF11386A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11386A_low_397 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 5 - 238
Target Start/End: Original strand, 47720490 - 47720723
Alignment:
| Q |
5 |
agtttggtgttgaatatataggaggtagaacaatggaagggcttgaatatgattgggattactagaaattattgttgaattgaagaagttagaatacaat |
104 |
Q |
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| T |
47720490 |
agtttggtaatgaatatataggaggtagaacaatggaagggcttgaatatgattcggatcactagaaattattgttgtattgaagaagttagaatacaat |
47720589 |
T |
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| Q |
105 |
ggttaatccgagagtagtagctccttaaggatgtggacacatcgaaataaatttgtgtagcaaataaccatttgaaagttaatccttagcaaatagaagt |
204 |
Q |
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| T |
47720590 |
ggttaatccaagagtagtagctccttaaggatgtggacacatcgaaataaatttgtgtagcaaataaccatttgaaagttaatccttagcaaatagaagt |
47720689 |
T |
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| Q |
205 |
catcgatgaatgatatgaagctcgacaaggtgga |
238 |
Q |
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| T |
47720690 |
catcgatgaatgatatgaagctcgacaaggtgga |
47720723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 5 - 238
Target Start/End: Original strand, 47727482 - 47727715
Alignment:
| Q |
5 |
agtttggtgttgaatatataggaggtagaacaatggaagggcttgaatatgattgggattactagaaattattgttgaattgaagaagttagaatacaat |
104 |
Q |
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| T |
47727482 |
agtttggtaatgaatatataggaggtagaacaatggaagggcttgaatatgattcggatcactagaaattattgttgtattgaagaagttagaatacaat |
47727581 |
T |
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| Q |
105 |
ggttaatccgagagtagtagctccttaaggatgtggacacatcgaaataaatttgtgtagcaaataaccatttgaaagttaatccttagcaaatagaagt |
204 |
Q |
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| T |
47727582 |
ggttaatccaagagtagtagctccttaaggatgtggacacatcgaaataaatttgtgtagcaaataaccatttgaaagttaatccttagcaaatagaagt |
47727681 |
T |
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| Q |
205 |
catcgatgaatgatatgaagctcgacaaggtgga |
238 |
Q |
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| T |
47727682 |
catcgatgaatgatatgaagctcgacaaggtgga |
47727715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 5 - 166
Target Start/End: Original strand, 47753411 - 47753572
Alignment:
| Q |
5 |
agtttggtgttgaatatataggaggtagaacaatggaagggcttgaatatgattgggattactagaaattattgttgaattgaagaagttagaatacaat |
104 |
Q |
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| T |
47753411 |
agtttggtaatgaatatataggaggtagaacaatggaagggcttgaatatgattcagatcactagaaattattgctgtattgaagaagttaaaatacaat |
47753510 |
T |
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| Q |
105 |
ggttaatccgagagtagtagctccttaaggatgtggacacatcgaaataaatttgtgtagca |
166 |
Q |
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| T |
47753511 |
ggttaatccgagagtaggagctccttaaggatatggacacatcaaagcaaatttatgtagca |
47753572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 202 - 236
Target Start/End: Original strand, 47753572 - 47753606
Alignment:
| Q |
202 |
agtcatcgatgaatgatatgaagctcgacaaggtg |
236 |
Q |
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| T |
47753572 |
agtcatcgatgaatgatatgaagctcgacaaggtg |
47753606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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