View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11386A_low_4 (Length: 585)
Name: NF11386A_low_4
Description: NF11386A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11386A_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 274 - 563
Target Start/End: Original strand, 36436825 - 36437106
Alignment:
| Q |
274 |
gtacaaatattattgaagaaattagaggcttaaaactttagttttatgaactttagagttgggggaatatgttgaaaaggtgaaaactcaatttttctaa |
373 |
Q |
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| T |
36436825 |
gtacaaatattattgaagaaattagaggcttaaaactttagttttatggactttagggttgggtgaatgtgttgaaaaggtgaaaactcaatttttctat |
36436924 |
T |
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| Q |
374 |
aattacatctcggtttatacaatgcaaagaaatcctagatcatcatcaatttgaaaacgaaatcactagaaaagaaagacttaatttggtcttttcgatt |
473 |
Q |
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| T |
36436925 |
aattacatctcggtttatacaatgcaaagaaatcctagatcatcatcaatttgaaaacgaaatcactagaaaagaaagactcaatttggtcttttcgatt |
36437024 |
T |
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| Q |
474 |
atcactctattgtcagtttgtcacagaacctaaaattaaagtgcatgaataatataattcatattctaatattttcttttaaacagtcta |
563 |
Q |
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| T |
36437025 |
atcactcta--------ttgtcacagaacctaaaattaaagtgcatgaataatataattcatattctaatattttcttttaaacagtcta |
36437106 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 27 - 189
Target Start/End: Original strand, 36436579 - 36436740
Alignment:
| Q |
27 |
ttacatatattatgcatttatttttaccaactgagttaaattcaagaggacatgtgaaacatgatataatataatattaaatgatgtctaatttgagcat |
126 |
Q |
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| T |
36436579 |
ttacatatattatacattt-ttcttaccaactgaactaaacttaagaggacatgtgaaacatgatataatataatattaaatgatgtctaatttgagcat |
36436677 |
T |
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| Q |
127 |
aacaatatggaaaaagaggtgtattatttgaacacaatttgtaagacagcttatggtacaacc |
189 |
Q |
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| T |
36436678 |
agcaatataaaaaaagagttgtattatttgaacacaatttgtaagacaacttatggtataacc |
36436740 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 22 - 65
Target Start/End: Complemental strand, 34968390 - 34968348
Alignment:
| Q |
22 |
agactttacatatattatgcatttatttttaccaactgagttaa |
65 |
Q |
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| T |
34968390 |
agactttacatatattatgca-ttatttttaccaactgagttaa |
34968348 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 70
Target Start/End: Original strand, 2228408 - 2228456
Alignment:
| Q |
21 |
cagactttacatatattatgcatttatttttaccaactgagttaaattca |
70 |
Q |
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| T |
2228408 |
cagaccttacatatattatgca-ttattcttactaactgagttaaattca |
2228456 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 24 - 68
Target Start/End: Complemental strand, 50650592 - 50650549
Alignment:
| Q |
24 |
actttacatatattatgcatttatttttaccaactgagttaaatt |
68 |
Q |
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| T |
50650592 |
actttacatttattatgcatt-atttttaccaactgaattaaatt |
50650549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 24 - 76
Target Start/End: Original strand, 24438297 - 24438348
Alignment:
| Q |
24 |
actttacatatattatgcatttatttttaccaactgagttaaattcaagagga |
76 |
Q |
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| T |
24438297 |
actttacatatattatgca-ttattcttaccaactgagttaagttcacgagga |
24438348 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 29 - 71
Target Start/End: Complemental strand, 41151503 - 41151462
Alignment:
| Q |
29 |
acatatattatgcatttatttttaccaactgagttaaattcaa |
71 |
Q |
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| T |
41151503 |
acatatattatgtatt-atttttaccaactgagttaaattcaa |
41151462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 44 - 78
Target Start/End: Complemental strand, 23776663 - 23776629
Alignment:
| Q |
44 |
ttatttttaccaactgagttaaattcaagaggaca |
78 |
Q |
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| T |
23776663 |
ttatttttaccaactgagttaaattcatgaggaca |
23776629 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 7404828 - 7404772
Alignment:
| Q |
20 |
tcagactttacatatattatgcatttatttttaccaactgagttaaattcaagagga |
76 |
Q |
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| T |
7404828 |
tcagaccttatatatattatgcatttgtctctaccaactgagttaaactcacgagga |
7404772 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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