View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11386A_low_400 (Length: 238)
Name: NF11386A_low_400
Description: NF11386A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11386A_low_400 |
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| [»] chr2 (9 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 15 - 238
Target Start/End: Complemental strand, 9329444 - 9329221
Alignment:
| Q |
15 |
aacttcactaaccttcacctcaaaaataattccctcaatttcaacctcatccttcagctcaataccgatctctaccaactcgatcttcctaatctaacca |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9329444 |
aacttcactaaccttcacctcaaaaataattccctcaatttcaacctcatccttcagctcaataccgatctctaccaactcgatcttcctaatctaacca |
9329345 |
T |
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| Q |
115 |
aatccatgattccactcaaccatcctttcagcaccaacattgctcctgtcacgcgtaacagcaacatggctcttatcggttcatgcaacggcctcattgc |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
9329344 |
aatccatgattccactcaaccatcctttcagcaccaacattgctcctgtcacgcgtaacagcaacatgggtcttatcggttcatgcaacggcctcattgc |
9329245 |
T |
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| Q |
215 |
tatctcctatggccaaatcgcttt |
238 |
Q |
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|||||||||||||||||||||||| |
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| T |
9329244 |
tatctcctatggccaaatcgcttt |
9329221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 24 - 238
Target Start/End: Original strand, 9283487 - 9283698
Alignment:
| Q |
24 |
aaccttcacctcaaaaataattccctcaatttcaacctcatccttcagctcaataccgatctctaccaactcgatcttcctaatctaaccaaatccatga |
123 |
Q |
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|||||||||||||||| | |||||||| ||||| |||||||| | | ||| ||| ||||||||||||||||| | ||||| |||||||||||||| | |
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| T |
9283487 |
aaccttcacctcaaaagt---tccctcaacttcaaactcatcctccgtcacaagaccaatctctaccaactcgatttccctaacctaaccaaatccataa |
9283583 |
T |
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| Q |
124 |
ttccactcaaccatcctttcagcaccaacattgctcctgtcacgcgtaacagcaacatggctcttatcggttcatgcaacggcctcattgctatctccta |
223 |
Q |
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| T |
9283584 |
taccgctcaaccatcctttcaccaccaacatcgatcctttcacgcttaacagcatcaaggctcttattggttcatgtaacggcctcctcgccatctacaa |
9283683 |
T |
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| Q |
224 |
tggccaaatcgcttt |
238 |
Q |
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| T |
9283684 |
tggcccaattgcttt |
9283698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 15 - 231
Target Start/End: Complemental strand, 9275368 - 9275150
Alignment:
| Q |
15 |
aacttcactaaccttcacctcaaaaataattccctcaatttcaacctcatccttcagctcaataccgat-ctctaccaactcgatcttcctaatctaacc |
113 |
Q |
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||||||| |||||||| ||||||||| |||||||||||||||||||| ||||| | ||| ||| | |||||| ||||| || | ||||| |||||| |
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| T |
9275368 |
aacttcatcaaccttcatctcaaaaat---tccctcaatttcaacctcattcttcaacacaacacccaaactctacgaactcaatttccctaacctaacc |
9275272 |
T |
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| Q |
114 |
aaatccatgattccactcaaccatcctttcagcaccaa----cattgctcctgtcacgcgtaacagcaacatggctcttatcggttcatgcaacggcctc |
209 |
Q |
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|||| ||| || | |||||||||||||||||| | ||| || || | || ||||||||||||||| |||||||||||| |||||||| ||||||||| |
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| T |
9275271 |
aaattcataatacaactcaaccatcctttcagtagcaagcaacaatgattctttcacgcgtaacagcaccatggctcttataggttcatgtaacggcctc |
9275172 |
T |
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| Q |
210 |
attgctatctcctatggccaaa |
231 |
Q |
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| T |
9275171 |
attgctatctccaatggccaaa |
9275150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 15 - 238
Target Start/End: Complemental strand, 9316870 - 9316650
Alignment:
| Q |
15 |
aacttcactaaccttcacctcaaaaataattccctcaatttcaacctcatccttcagctcaataccgatctctaccaactcgatctt---cctaatctaa |
111 |
Q |
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||||||| |||||||||||||||||||||||||||||| | | |||||||| ||| |||| ||||||||| ||||| | ||| | |||| |
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| T |
9316870 |
aacttcatcaaccttcacctcaaaaataattccctcaatcgatccttaatccttcattacaaatccgaactctaccaaatcgatgatttccctgacctaa |
9316771 |
T |
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| Q |
112 |
ccaaatccatgattccactcaaccatcctttcagcaccaacattgctcctgtcacgcgtaacagcaacatggctcttatcggttcatgcaacggcctcat |
211 |
Q |
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| T |
9316770 |
cgaaatccatgattccactcaaccatccttt------caacacagctcctgtcacgtataacagcataatggctcttctcggttcatgtaacggccttct |
9316677 |
T |
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| Q |
212 |
tgctatctcctatggccaaatcgcttt |
238 |
Q |
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|| || ||| |||| ||||||||||| |
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| T |
9316676 |
cgccatttccaatggtcaaatcgcttt |
9316650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 120 - 230
Target Start/End: Complemental strand, 9321722 - 9321606
Alignment:
| Q |
120 |
atgattccactcaaccatcctttcagcaccaacattgctcctgtcacgcgtaa------cagcaacatggctcttatcggttcatgcaacggcctcattg |
213 |
Q |
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||||||||||||||||||||||||| |||||| || |||||||||| ||||| ||| | |||||||||||||||||| || ||||||||| | | |
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| T |
9321722 |
atgattccactcaaccatcctttcaccaccaaaatcactcctgtcacacgtaatagaaccagaaccatggctcttatcggttcctgtaacggcctcctcg |
9321623 |
T |
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| Q |
214 |
ctatctcctatggccaa |
230 |
Q |
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| T |
9321622 |
ccatctcccacggccaa |
9321606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 179 - 238
Target Start/End: Original strand, 7115101 - 7115160
Alignment:
| Q |
179 |
catggctcttatcggttcatgcaacggcctcattgctatctcctatggccaaatcgcttt |
238 |
Q |
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| T |
7115101 |
catggatcttatcggttcatgtaacggcctcctcgccatctccaatggccaaatcgcttt |
7115160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 238
Target Start/End: Complemental strand, 9357880 - 9357802
Alignment:
| Q |
163 |
tcacgcgtaacagca---acatggctcttatcggttcatgcaacggcctcattgctatctcctatggccaaatcgcttt |
238 |
Q |
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||||||||||||||| |||| |||||||||||||||| ||||||||| | || |||||| ||||| |||||||||| |
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| T |
9357880 |
tcacgcgtaacagcaccaacatttctcttatcggttcatgtaacggcctcctcgccatctccaatggcgaaatcgcttt |
9357802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 154
Target Start/End: Complemental strand, 10348585 - 10348509
Alignment:
| Q |
78 |
accgatctctaccaactcgatcttcctaatctaaccaaatccatgattccactcaaccatcctttcagcaccaacat |
154 |
Q |
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|||||| ||||||||||| || | ||||| ||||||||||| || |||||||||||| |||| |||| |||||||| |
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| T |
10348585 |
accgatttctaccaactccatttccctaacctaaccaaatctatcattccactcaactatcccttcactaccaacat |
10348509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 53
Target Start/End: Original strand, 9060402 - 9060440
Alignment:
| Q |
15 |
aacttcactaaccttcacctcaaaaataattccctcaat |
53 |
Q |
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| T |
9060402 |
aacttcactaacctttacctcaaaaataatcccctcaat |
9060440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 167 - 238
Target Start/End: Complemental strand, 37463191 - 37463120
Alignment:
| Q |
167 |
gcgtaacagcaacatggctcttatcggttcatgcaacggcctcattgctatctcctatggccaaatcgcttt |
238 |
Q |
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|||| |||||| ||||||||||||||||||||| ||||||||| | ||||||||| |||||||||||||||| |
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| T |
37463191 |
gcgtgacagcaccatggctcttatcggttcatgtaacggcctcctcgctatctccaatggccaaatcgcttt |
37463120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 67
Target Start/End: Complemental strand, 562015 - 561966
Alignment:
| Q |
15 |
aacttcactaaccttcacctcaaaaataattccctcaatttcaacctcatcct |
67 |
Q |
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|||||||||||||||||||||||| || ||||||||||| ||||||||||| |
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| T |
562015 |
aacttcactaaccttcacctcaaa---aactccctcaattttaacctcatcct |
561966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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