View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11386A_low_409 (Length: 236)

Name: NF11386A_low_409
Description: NF11386A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11386A_low_409
NF11386A_low_409
[»] chr3 (21 HSPs)
chr3 (9-235)||(33399476-33399702)
chr3 (8-235)||(14399495-14399722)
chr3 (9-188)||(46992187-46992366)
chr3 (9-235)||(7841909-7842135)
chr3 (26-235)||(36816410-36816619)
chr3 (9-188)||(29930309-29930488)
chr3 (9-188)||(29979463-29979642)
chr3 (9-188)||(48249808-48249987)
chr3 (9-235)||(21955132-21955358)
chr3 (28-188)||(13746662-13746822)
chr3 (28-188)||(30946583-30946743)
chr3 (26-188)||(77961-78123)
chr3 (9-187)||(6504897-6505075)
chr3 (26-188)||(7838554-7838716)
chr3 (28-188)||(3949703-3949863)
chr3 (28-188)||(6741847-6742007)
chr3 (28-188)||(8159924-8160084)
chr3 (28-188)||(9428774-9428934)
chr3 (28-188)||(16445580-16445740)
chr3 (78-190)||(25059880-25059992)
chr3 (28-171)||(50954233-50954376)
[»] chr1 (23 HSPs)
chr1 (9-232)||(26466167-26466390)
chr1 (9-236)||(32106536-32106760)
chr1 (9-236)||(16246647-16246871)
chr1 (9-224)||(25231244-25231458)
chr1 (9-235)||(21943258-21943484)
chr1 (9-235)||(7980106-7980332)
chr1 (9-235)||(50116657-50116883)
chr1 (9-188)||(38691880-38692059)
chr1 (9-188)||(46974105-46974284)
chr1 (9-235)||(37015855-37016081)
chr1 (26-235)||(51663216-51663425)
chr1 (117-188)||(5078984-5079055)
chr1 (28-188)||(20350416-20350576)
chr1 (28-188)||(29355629-29355789)
chr1 (28-188)||(41454797-41454957)
chr1 (28-188)||(3947402-3947562)
chr1 (28-188)||(3984073-3984233)
chr1 (79-235)||(13174792-13174948)
chr1 (28-188)||(38775056-38775216)
chr1 (28-188)||(44466542-44466702)
chr1 (28-188)||(44620044-44620204)
chr1 (28-188)||(13630376-13630536)
chr1 (133-196)||(39914002-39914065)
[»] chr5 (18 HSPs)
chr5 (24-236)||(20285965-20286177)
chr5 (42-226)||(23028463-23028654)
chr5 (33-185)||(13157978-13158130)
chr5 (9-189)||(20286449-20286630)
chr5 (26-235)||(18537230-18537439)
chr5 (9-188)||(1035491-1035670)
chr5 (117-188)||(7020821-7020892)
chr5 (9-188)||(25896042-25896221)
chr5 (9-188)||(7799947-7800126)
chr5 (117-188)||(27866786-27866857)
chr5 (117-188)||(34078829-34078900)
chr5 (54-188)||(13567043-13567177)
chr5 (28-182)||(38859137-38859291)
chr5 (79-188)||(4202880-4202989)
chr5 (28-182)||(11032399-11032553)
chr5 (28-188)||(37819818-37819978)
chr5 (133-188)||(28885349-28885404)
chr5 (141-235)||(1036424-1036518)
[»] chr4 (15 HSPs)
chr4 (45-236)||(6182653-6182844)
chr4 (9-188)||(18580269-18580448)
chr4 (26-235)||(4976713-4976922)
chr4 (26-235)||(4978848-4979057)
chr4 (116-188)||(4769178-4769250)
chr4 (28-188)||(9890982-9891142)
chr4 (79-235)||(11502517-11502673)
chr4 (125-188)||(19072598-19072661)
chr4 (9-188)||(21471735-21471914)
chr4 (26-235)||(51643392-51643603)
chr4 (9-101)||(17140530-17140622)
chr4 (28-188)||(49565405-49565565)
chr4 (117-188)||(3404839-3404910)
chr4 (117-188)||(41024248-41024319)
chr4 (9-101)||(38463825-38463917)
[»] chr2 (22 HSPs)
chr2 (25-236)||(17997065-17997276)
chr2 (9-188)||(12907433-12907612)
chr2 (9-235)||(41007874-41008100)
chr2 (49-235)||(436292-436478)
chr2 (9-188)||(11692755-11692934)
chr2 (9-235)||(43949176-43949402)
chr2 (28-188)||(7263992-7264152)
chr2 (117-188)||(3802507-3802578)
chr2 (117-188)||(27275301-27275372)
chr2 (9-184)||(28354847-28355022)
chr2 (117-188)||(45476407-45476478)
chr2 (9-235)||(24750599-24750825)
chr2 (26-235)||(24604983-24605192)
chr2 (28-188)||(212382-212542)
chr2 (28-188)||(10623395-10623555)
chr2 (117-188)||(5348216-5348287)
chr2 (117-188)||(41561061-41561132)
chr2 (117-235)||(34920676-34920794)
chr2 (28-188)||(38946723-38946883)
chr2 (28-182)||(39794930-39795084)
chr2 (9-170)||(1100042-1100203)
chr2 (9-99)||(34920802-34920892)
[»] chr7 (14 HSPs)
chr7 (9-235)||(8400527-8400753)
chr7 (9-235)||(43827500-43827726)
chr7 (9-235)||(47061824-47062050)
chr7 (9-156)||(21799953-21800100)
chr7 (28-188)||(617690-617850)
chr7 (28-188)||(18106348-18106508)
chr7 (28-188)||(30787499-30787659)
chr7 (28-188)||(43623076-43623236)
chr7 (28-188)||(45764339-45764499)
chr7 (117-188)||(15060662-15060733)
chr7 (28-187)||(42500367-42500526)
chr7 (78-196)||(20908450-20908568)
chr7 (127-225)||(3761964-3762062)
chr7 (142-226)||(16794516-16794600)
[»] chr8 (15 HSPs)
chr8 (9-235)||(7168841-7169067)
chr8 (26-235)||(35965639-35965848)
chr8 (9-188)||(45455317-45455496)
chr8 (9-235)||(39751922-39752148)
chr8 (79-188)||(22580914-22581023)
chr8 (9-225)||(14401676-14401894)
chr8 (9-188)||(43689112-43689291)
chr8 (26-235)||(43370725-43370934)
chr8 (49-171)||(2145948-2146070)
chr8 (28-188)||(7341039-7341199)
chr8 (28-188)||(8422797-8422957)
chr8 (28-188)||(30304551-30304711)
chr8 (28-188)||(32377849-32378009)
chr8 (28-188)||(32431806-32431966)
chr8 (117-188)||(1115821-1115892)
[»] scaffold0219 (1 HSPs)
scaffold0219 (9-235)||(17010-17236)
[»] chr6 (12 HSPs)
chr6 (9-188)||(18606937-18607116)
chr6 (79-188)||(31147333-31147442)
chr6 (9-188)||(24220107-24220286)
chr6 (26-188)||(7362137-7362299)
chr6 (28-188)||(28250856-28251016)
chr6 (49-235)||(29287842-29288028)
chr6 (28-188)||(1611692-1611852)
chr6 (78-193)||(34111598-34111713)
chr6 (117-235)||(21358241-21358359)
chr6 (117-235)||(23962223-23962341)
chr6 (9-101)||(35243544-35243636)
chr6 (28-101)||(13387722-13387795)
[»] scaffold0341 (1 HSPs)
scaffold0341 (117-188)||(16298-16369)
[»] scaffold0340 (1 HSPs)
scaffold0340 (9-188)||(111-290)
[»] scaffold0116 (1 HSPs)
scaffold0116 (9-235)||(12203-12429)
[»] scaffold0494 (1 HSPs)
scaffold0494 (28-188)||(1841-2001)
[»] scaffold0101 (1 HSPs)
scaffold0101 (28-188)||(33769-33929)


Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 9 - 235
Target Start/End: Original strand, 33399476 - 33399702
Alignment:
Q  9 aagaatatgtaggtgtatgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatg 108  Q
    ||||| |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33399476 aagaaaatgtaggtgtatgttcatggttcgtggatatcttagtaggcaagcaaatgattcgagattaaatattcttaatggagttcacaaccaagagatg 33399575  T
Q  109 taacgaagtttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcgtacaaaaaatc 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||     
T  33399576 taacgaagtttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtacgtgacttgaccaagagtttggtgcttccaaaaaata 33399675  T
Q  209 ttttgttaaatttgaagaccaaaagac 235  Q
    |||||||||||||||||||||||||||    
T  33399676 ttttgttaaatttgaagaccaaaagac 33399702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 8 - 235
Target Start/End: Original strand, 14399495 - 14399722
Alignment:
Q  8 gaagaatatgtaggtgtatgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagat 107  Q
    |||||| |||| ||||| |||||||| || ||| |||||  |||| ||||||||| || | | |||| || ||||| ||||||||||||||||| |  ||    
T  14399495 gaagaaaatgtgggtgtttgttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattctaaatggagttcacaaccatgccat 14399594  T
Q  108 gtaacgaagtttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcgtacaaaaaat 207  Q
    | | |    ||||||| ||||||| ||||| |||||||||||| |||||| ||||||| ||||| ||||||||||||||||   | ||| | ||| ||||    
T  14399595 ggagccggctttagaaggacacattcttgccggtagattaaagaaggatgacaagaagattgtacgtgacttgaccaagagcaagatgcttccaagaaat 14399694  T
Q  208 cttttgttaaatttgaagaccaaaagac 235  Q
     ||||| || ||||||||| ||||||||    
T  14399695 attttgatacatttgaagaacaaaagac 14399722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 9 - 188
Target Start/End: Complemental strand, 46992366 - 46992187
Alignment:
Q  9 aagaatatgtaggtgtatgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatg 108  Q
    ||||| |||| ||||  |||||||| || ||| |||||  |||| ||||||||| || | | |||| || ||||||||||||||||||||||| | ||||    
T  46992366 aagaaaatgtgggtgcttgttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatgcgatg 46992267  T
Q  109 taacgaagtttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagag 188  Q
     | |    ||||||| ||||||| ||||| ||||||||||||||||| | ||||||| ||||| ||||||||||||||||    
T  46992266 gagccggctttagaaggacacattcttgccggtagattaaaggaggacgacaagaagattgtacgtgacttgaccaagag 46992187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 9 - 235
Target Start/End: Complemental strand, 7842135 - 7841909
Alignment:
Q  9 aagaatatgtaggtgtatgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatg 108  Q
    ||||| |||| ||||  |||||||| || ||| |||||  |||| ||||||||| || |   |||| || ||||||||||||||||||||||| | ||||    
T  7842135 aagaaaatgtgggtgcttgttcatgattagtggatatcaaagtaagcaaacaaaggaatgaggattgaacattcttaatggagttcacaaccatgcgatg 7842036  T
Q  109 taacgaagtttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcgtacaaaaaatc 208  Q
     | |    ||||||| ||||||| |||||  |||||||||||||||| | ||||||| ||||| ||||||||||||||||   | ||| | ||| ||||     
T  7842035 aagccggctttagaaggacacattcttgcctgtagattaaaggaggacgacaagaagattgtacgtgacttgaccaagagcaagatgcttccaagaaata 7841936  T
Q  209 ttttgttaaatttgaagaccaaaagac 235  Q
    ||||| || ||||||||| ||||||||    
T  7841935 ttttgatacatttgaagaacaaaagac 7841909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 26 - 235
Target Start/End: Complemental strand, 36816619 - 36816410
Alignment:
Q  26 tgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaag 125  Q
    |||||||| || ||| |||||  |||| ||||||||| || | | |||| || |||||||||||||||||||||||    ||| | |    ||||||| |    
T  36816619 tgttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatcccatggagccggctttagaagg 36816520  T
Q  126 acacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcgtacaaaaaatcttttgttaaatttgaag 225  Q
    |||||| ||||| ||||||||||||||||| | ||||||| ||||| ||||||||||||||||   | ||| | ||| |||| ||||| || ||||||||    
T  36816519 acacattcttgccggtagattaaaggaggacgacaagaagattgtacgtgacttgaccaagagcaagatgcttccaagaaatattttgatacatttgaag 36816420  T
Q  226 accaaaagac 235  Q
    | ||||||||    
T  36816419 aacaaaagac 36816410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 9 - 188
Target Start/End: Original strand, 29930309 - 29930488
Alignment:
Q  9 aagaatatgtaggtgtatgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatg 108  Q
    ||||| |||| ||||  |||||||| || ||| |||||  |||| ||||||||| || | | |||| || ||||||||||||||||||||||| | ||||    
T  29930309 aagaaaatgtgggtgcttgttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatgcgatg 29930408  T
Q  109 taacgaagtttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagag 188  Q
       |    ||||||| ||||||| ||||  ||||||||||||||||| | ||||||| ||||| ||||||||||||||||    
T  29930409 atgccggctttagaaggacacattcttggcggtagattaaaggaggacgacaagaagattgtacgtgacttgaccaagag 29930488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 9 - 188
Target Start/End: Original strand, 29979463 - 29979642
Alignment:
Q  9 aagaatatgtaggtgtatgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatg 108  Q
    ||||| |||| ||||  |||||||| || ||| |||||  |||| ||||||||| || | | |||| || ||||||||||||||||||||||| | ||||    
T  29979463 aagaaaatgtgggtgcttgttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatgcgatg 29979562  T
Q  109 taacgaagtttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagag 188  Q
       |    ||||||| ||||||| ||||  ||||||||||||||||| | ||||||| ||||| ||||||||||||||||    
T  29979563 atgccggctttagaaggacacattcttggcggtagattaaaggaggacgacaagaagattgtacgtgacttgaccaagag 29979642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 9 - 188
Target Start/End: Complemental strand, 48249987 - 48249808
Alignment:
Q  9 aagaatatgtaggtgtatgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatg 108  Q
    ||||| |||| ||||  |||||||| || ||| |||||  |||| ||||||||| || | | |||| || ||||||||||||||||||||||| | ||||    
T  48249987 aagaaaatgtgggtgcttgttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatgcgatg 48249888  T
Q  109 taacgaagtttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagag 188  Q
     | |    |||| || ||||||| ||||| ||||||||||||||||| | |||||||  |||| ||||||||||||||||    
T  48249887 gagccggctttataaggacacattcttgccggtagattaaaggaggacgacaagaagactgtacgtgacttgaccaagag 48249808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 9 - 235
Target Start/End: Complemental strand, 21955358 - 21955132
Alignment:
Q  9 aagaatatgtaggtgtatgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatg 108  Q
    ||||| |||| ||||  |||||||| || ||| |||||  |||| | ||||||| || | | |||| || ||||||||||||||||||||||| | ||||    
T  21955358 aagaaaatgtgggtgcttgttcatgattagtggatatcaaagtaagtaaacaaaggaatggggattgaacattcttaatggagttcacaaccatgcgatg 21955259  T
Q  109 taacgaagtttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcgtacaaaaaatc 208  Q
     | |    | ||||| |||||||  |||| ||||||||||||||||| | ||||||| ||||| ||||||||||||||||   | ||| | ||| ||||     
T  21955258 gagccggctctagaaggacacattattgccggtagattaaaggaggacgacaagaagattgtacgtgacttgaccaagagcaagatgcttccaagaaata 21955159  T
Q  209 ttttgttaaatttgaagaccaaaagac 235  Q
    ||||| || ||||||||| ||||||||    
T  21955158 ttttgatacatttgaagaacaaaagac 21955132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 28 - 188
Target Start/End: Complemental strand, 13746822 - 13746662
Alignment:
Q  28 ttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagac 127  Q
    |||||| || ||| |||||  |||| ||||||||| || | | |||| || |||||||||||||||||||||||    ||| | |    ||||||| |||    
T  13746822 ttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatcccatggagccggctttagaaggac 13746723  T
Q  128 acatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagag 188  Q
    |||| ||||| ||||||||||||||||| | ||||||| ||||| ||||||||||||||||    
T  13746722 acattcttgccggtagattaaaggaggacgacaagaagattgtacgtgacttgaccaagag 13746662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 28 - 188
Target Start/End: Complemental strand, 30946743 - 30946583
Alignment:
Q  28 ttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagac 127  Q
    |||||| || ||| |||||  |||| ||||||||| || | | |||| || |||||||||||||||||||||||    ||| | |    ||||||| |||    
T  30946743 ttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatcccatggagccggctttagaaggac 30946644  T
Q  128 acatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagag 188  Q
    |||| ||||| ||||||||||||||||||| ||||||| | ||| ||||||||||||||||    
T  30946643 acattcttgccggtagattaaaggaggatgacaagaagatcgtacgtgacttgaccaagag 30946583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 26 - 188
Target Start/End: Complemental strand, 78123 - 77961
Alignment:
Q  26 tgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaag 125  Q
    |||||||| || ||| |||||  |||| ||||||||| || | | |||| || |||||||||||||||||||||||   |||| | |    ||||||| |    
T  78123 tgttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatttgatggagccggctttagaagg 78024  T
Q  126 acacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagag 188  Q
    ||||||  |||| |||||||||||||| || | ||||||| ||||| ||||||||||||||||    
T  78023 acacattattgccggtagattaaaggaagacgacaagaagattgtacgtgacttgaccaagag 77961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 187
Target Start/End: Complemental strand, 6505075 - 6504897
Alignment:
Q  9 aagaatatgtaggtgtatgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatg 108  Q
    ||||| |||| ||||  |||||||| || ||| |||||  |||| ||||||||| || | | |||| || ||||||||||||||||||||||| | ||||    
T  6505075 aagaaaatgtgggtgcttgttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatgcgatg 6504976  T
Q  109 taacgaagtttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaaga 187  Q
     | |    ||||||| ||||||| ||||| |||||| |||||||||| |  |||||| |||||  ||||||||||||||    
T  6504975 gagccggctttagaatgacacattcttgccggtagactaaaggaggacgaaaagaagattgtacatgacttgaccaaga 6504897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 26 - 188
Target Start/End: Original strand, 7838554 - 7838716
Alignment:
Q  26 tgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaag 125  Q
    |||||||| || ||| |||||  |||| ||||||||| || | | |||| || ||||||| ||||||||||||||| | |||| | |    ||||||| |    
T  7838554 tgttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttagtggagttcacaaccatgcgatggagccggctttagaagg 7838653  T
Q  126 acacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagag 188  Q
    |||||| ||| | |||||| |||||||||| | ||||||| ||||| ||||||||||||||||    
T  7838654 acacattctttccggtagactaaaggaggacgacaagaagattgtacgtgacttgaccaagag 7838716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 28 - 188
Target Start/End: Original strand, 3949703 - 3949863
Alignment:
Q  28 ttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagac 127  Q
    |||||| || ||| |||||  |||| ||||||||| || | | |||| || |||||||||||||||||||||||    ||| | |    ||||||| |||    
T  3949703 ttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatcccatggagccggctttagaaggac 3949802  T
Q  128 acatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagag 188  Q
    |||| ||||| ||||||||||||||||| | ||||||| | ||| ||||||||||||||||    
T  3949803 acattcttgccggtagattaaaggaggacgacaagaagatcgtacgtgacttgaccaagag 3949863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 28 - 188
Target Start/End: Original strand, 6741847 - 6742007
Alignment:
Q  28 ttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagac 127  Q
    |||||| || ||| |||||  |||| ||||||||| || | | |||| || |||||||||||||||||||||||    ||| | |    ||||||| |||    
T  6741847 ttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatcccatggagccggctttagaaggac 6741946  T
Q  128 acatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagag 188  Q
    |||| ||||| ||||||||||||||||| | ||||||| | ||| ||||||||||||||||    
T  6741947 acattcttgccggtagattaaaggaggacgacaagaagatcgtacgtgacttgaccaagag 6742007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 28 - 188
Target Start/End: Complemental strand, 8160084 - 8159924
Alignment:
Q  28 ttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagac 127  Q
    |||||| || ||| |||||  |||| ||||||||| || | | |||| || |||||||||||||||||||||||    ||| | |    ||||||| |||    
T  8160084 ttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatcccatggagccggctttagaaggac 8159985  T
Q  128 acatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagag 188  Q
    |||| ||||| ||||||||||||||||| | ||||||| | ||| ||||||||||||||||    
T  8159984 acattcttgccggtagattaaaggaggacgacaagaagatcgtacgtgacttgaccaagag 8159924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 28 - 188
Target Start/End: Complemental strand, 9428934 - 9428774
Alignment:
Q  28 ttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagac 127  Q
    |||||| || ||| |||||  |||| ||||||||| || | | |||| || |||||||||||||||||||||||    ||| | |    ||||||| |||    
T  9428934 ttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatcccatggagccggctttagaaggac 9428835  T
Q  128 acatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagag 188  Q
    |||| ||||| ||||||||||||||||| | ||||||| ||||| |||||||||| |||||    
T  9428834 acattcttgccggtagattaaaggaggacgacaagaagattgtacgtgacttgacaaagag 9428774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 28 - 188
Target Start/End: Original strand, 16445580 - 16445740
Alignment:
Q  28 ttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagac 127  Q
    |||||| || ||| |||||  |||| ||||||||| || | | |||| || |||||||||||||||||||||||    ||| | |    ||||||| |||    
T  16445580 ttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatcccatggagccggctttagaaggac 16445679  T
Q  128 acatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagag 188  Q
    |||| ||| | ||||||||||||||||| | ||||||| ||||| |||||||||| |||||    
T  16445680 acattctttccggtagattaaaggaggacgacaagaagattgtacgtgacttgacaaagag 16445740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 190
Target Start/End: Complemental strand, 25059992 - 25059880
Alignment:
Q  78 tattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgac 177  Q
    |||||||||||| |||||||||||  |||||| || |  ||||| | | ||||| |||||||  ||||||| | |||| | |||| || || ||||||||    
T  25059992 tattcttaatggtgttcacaaccataagatgttaccatatttagcagggcacattcttgcggaaagattaatgaaggacgacaaggagattatatgtgac 25059893  T
Q  178 ttgaccaagagtt 190  Q
    |||||||||||||    
T  25059892 ttgaccaagagtt 25059880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 171
Target Start/End: Original strand, 50954233 - 50954376
Alignment:
Q  28 ttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagac 127  Q
    |||||| || ||| |||||  |||| ||||||||| || | | |||| || |||||||||||||||||||||||    ||| | |    ||||||| |||    
T  50954233 ttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatcccatggagccggctttagaaggac 50954332  T
Q  128 acatgcttgcgggtagattaaaggaggatggcaagaagcttgta 171  Q
    |||| ||||| ||||||||||||||||| | ||||||| |||||    
T  50954333 acattcttgccggtagattaaaggaggacgacaagaagattgta 50954376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 124; Significance: 6e-64; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 9 - 232
Target Start/End: Complemental strand, 26466390 - 26466167
Alignment:
Q  9 aagaatatgtaggtgtatgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatg 108  Q
    ||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| ||||||    
T  26466390 aagaaaatgtaggtgtatgttcattgttcgtggatatcttagtaggcaaacaaatgattggagattaaacattcttaatggagttcacaaccatgagatg 26466291  T
Q  109 taacgaagtttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcgtacaaaaaatc 208  Q
     | |    ||||||| |||||||||||||||||||||||||||||||||  |||||| ||||| ||||||||||||||| |  ||||| | ||| ||||     
T  26466290 gagccggctttagaatgacacatgcttgcgggtagattaaaggaggatgataagaagattgtacgtgacttgaccaagactaaggtgcttccaagaaata 26466191  T
Q  209 ttttgttaaatttgaagaccaaaa 232  Q
    |||||||||||||||||| |||||    
T  26466190 ttttgttaaatttgaagaacaaaa 26466167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 9 - 236
Target Start/End: Complemental strand, 32106760 - 32106536
Alignment:
Q  9 aagaatatgtaggtgtatgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatg 108  Q
    ||||| |||| |||| |||||||||||||||| ||||||||| ||| |||||||||||| |||||| |||||||||||  |||||||||| || ||||||    
T  32106760 aagaaaatgtgggtgaatgttcatggttcgtggatatcttagaaggtaaacaaatgattggagattgaatattcttaa--gagttcacaatcatgagatg 32106663  T
Q  109 taacgaagtttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcgtacaaaaaatc 208  Q
     | | |||||||||| |||||||| |||| ||||||||||||||| ||| ||| |||||||||||||||||||||||||||||||||| |  |||||||     
T  32106662 gagccaagtttagaaggacacatgattgctggtagattaaaggagaatgacaaaaagcttgtatgtgacttgaccaagagtttggtgctttgaaaaaat- 32106564  T
Q  209 ttttgttaaatttgaagaccaaaagaca 236  Q
      |||||||||||||||| |||||||||    
T  32106563 agttgttaaatttgaagagcaaaagaca 32106536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 9 - 236
Target Start/End: Complemental strand, 16246871 - 16246647
Alignment:
Q  9 aagaatatgtaggtgtatgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatg 108  Q
    ||||| |||| ||||||||||||||||| ||||||||||  |||||||||||||||| | |||||| || ||| |||||| |||||||||||| | ||||    
T  16246871 aagaaaatgtgggtgtatgttcatggttagtgaatatctgtgtaggcaaacaaatgaatggagattgaa-attgttaatgaagttcacaaccatgcgatg 16246773  T
Q  109 taacgaagtttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcgtacaaaaaatc 208  Q
     | |  | ||||||| ||||||||||| | ||||||||||| ||||||| ||||||| ||||| ||||||| ||||| ||   ||||| | | || |||     
T  16246772 gagccgactttagaaggacacatgcttaccggtagattaaaagaggatgacaagaagattgtacgtgactt-accaaaagcaaggtgcat-ccaagaata 16246675  T
Q  209 ttttgttaaatttgaagaccaaaagaca 236  Q
    ||||||||||||||||||  ||||||||    
T  16246674 ttttgttaaatttgaagagaaaaagaca 16246647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 9 - 224
Target Start/End: Original strand, 25231244 - 25231458
Alignment:
Q  9 aagaatatgtaggtgtatgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatg 108  Q
    ||||| |||| ||||||||| |||  ||| || |||| |||||||| |||||||||| | |||||| |||||| | ||||||||||||||||  |||| |    
T  25231244 aagaaaatgtgggtgtatgt-cattcttcctggatatattagtagggaaacaaatgactggagattgaatattttcaatggagttcacaaccgtgagacg 25231342  T
Q  109 taacgaagtttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcgtacaaaaaatc 208  Q
     | | |||||| ||| ||||||||||||| ||||||| || |||||||  ||||||| ||||| |||||||||||||  ||||||||| |  || ||||     
T  25231343 aagccaagtttggaaggacacatgcttgcaggtagatcaagggaggataccaagaagattgtacgtgacttgaccaaatgtttggtgcttttaacaaata 25231442  T
Q  209 ttttgttaaatttgaa 224  Q
    ||||||||||||||||    
T  25231443 ttttgttaaatttgaa 25231458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 9 - 235
Target Start/End: Complemental strand, 21943484 - 21943258
Alignment:
Q  9 aagaatatgtaggtgtatgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatg 108  Q
    ||||| |||| ||||  |||| |||||| ||| |||||  |||||||||||||| || | | |||| || ||||| ||||||||||||||||| | ||||    
T  21943484 aagaaaatgtgggtgcttgtttatggttagtggatatcaaagtaggcaaacaaaggaatggggattgaacattctcaatggagttcacaaccatgggatg 21943385  T
Q  109 taacgaagtttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcgtacaaaaaatc 208  Q
     | |   |||||||| ||||||| ||| | ||||||||||||||||| | ||||||| ||||| ||||||||||||||||   | ||| | ||| ||||     
T  21943384 gagccgggtttagaaggacacattcttaccggtagattaaaggaggacgacaagaagattgtacgtgacttgaccaagagcaagatgcttccaagaaata 21943285  T
Q  209 ttttgttaaatttgaagaccaaaagac 235  Q
    ||||| |||||||||||| ||||||||    
T  21943284 ttttgataaatttgaagaacaaaagac 21943258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 9 - 235
Target Start/End: Complemental strand, 7980332 - 7980106
Alignment:
Q  9 aagaatatgtaggtgtatgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatg 108  Q
    ||||| |||| ||||| |||||||| || ||| |||||  |||| ||||||||| || | | |||| || ||||||||||||||||||||||| |  |||    
T  7980332 aagaaaatgtgggtgtttgttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatgcaatg 7980233  T
Q  109 taacgaagtttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcgtacaaaaaatc 208  Q
     |      ||||||| ||||||| ||||| ||||||||||||||||||| ||||||| ||||| ||||||||||||||||   | ||| | ||| ||||     
T  7980232 cagtcggctttagaaggacacattcttgccggtagattaaaggaggatgacaagaagattgtacgtgacttgaccaagagcaagatgcttccaagaaata 7980133  T
Q  209 ttttgttaaatttgaagaccaaaagac 235  Q
    ||||| || ||||||||| ||||||||    
T  7980132 ttttgatacatttgaagaacaaaagac 7980106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 9 - 235
Target Start/End: Complemental strand, 50116883 - 50116657
Alignment:
Q  9 aagaatatgtaggtgtatgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatg 108  Q
    ||||| |||| ||||  |||||||| || ||| |||||  |||| ||||| ||| || | |||||| || |||||||||||||||||| |||| | ||||    
T  50116883 aagaaaatgtgggtgcttgttcatgattagtggatatcaaagtaagcaaataaaggaatggagattgaacattcttaatggagttcactaccatgcgatg 50116784  T
Q  109 taacgaagtttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcgtacaaaaaatc 208  Q
     | |    ||||||| ||||||| ||||| ||||||||||||||||| | ||||||| ||||  |||||||||||||||||| | ||| | ||| ||||     
T  50116783 gagccggctttagaaggacacattcttgccggtagattaaaggaggacgacaagaagattgttcgtgacttgaccaagagttagatgcttccaagaaata 50116684  T
Q  209 ttttgttaaatttgaagaccaaaagac 235  Q
    ||||| || ||||||||| ||||||||    
T  50116683 ttttgatacatttgaagaacaaaagac 50116657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 9 - 188
Target Start/End: Complemental strand, 38692059 - 38691880
Alignment:
Q  9 aagaatatgtaggtgtatgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatg 108  Q
    ||||| |||| ||||| |||||||| || ||| |||||  |||| ||||||||| || | | |||| || ||||||||||||||||||||||| | ||||    
T  38692059 aagaaaatgtgggtgtttgttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatgcgatg 38691960  T
Q  109 taacgaagtttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagag 188  Q
     | |  | ||||||| ||||| | ||||| |||| |||||||||||| | ||||||| ||||| ||||||||||||||||    
T  38691959 gagccgactttagaaggacacgttcttgccggtaaattaaaggaggacgacaagaagattgtacgtgacttgaccaagag 38691880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 9 - 188
Target Start/End: Original strand, 46974105 - 46974284
Alignment:
Q  9 aagaatatgtaggtgtatgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatg 108  Q
    ||||| |||| ||||| |||||||| || ||| |||||  |||| ||||||||| || | | |||| || ||||||||||||||| ||||||| | ||||    
T  46974105 aagaaaatgtgggtgtttgttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagtttacaaccatgcgatg 46974204  T
Q  109 taacgaagtttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagag 188  Q
     | |  | ||||||| ||||||| ||||| |||| |||||||||||| | ||||||| ||||| ||||||||||||||||    
T  46974205 gagccgactttagaaggacacattcttgccggtacattaaaggaggacgacaagaagattgtacgtgacttgaccaagag 46974284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 9 - 235
Target Start/End: Original strand, 37015855 - 37016081
Alignment:
Q  9 aagaatatgtaggtgtatgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatg 108  Q
    ||||| |||| ||||  |||||||| || ||| |||||  |||| ||||||||| || | | |||| || ||||||||||||||||||||||| | ||||    
T  37015855 aagaaaatgtgggtgcttgttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatgcgatg 37015954  T
Q  109 taacgaagtttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcgtacaaaaaatc 208  Q
     | |    ||||||| ||||||| ||||| ||||||||||||||||| | ||||||| ||||  ||||||||||||||||   | ||| | ||| ||||     
T  37015955 gagctggctttagaaggacacattcttgccggtagattaaaggaggacgacaagaagattgtgcgtgacttgaccaagagcaagatgcttccaagaaata 37016054  T
Q  209 ttttgttaaatttgaagaccaaaagac 235  Q
    ||||| || ||||||||| ||||||||    
T  37016055 ttttgatacatttgaagaacaaaagac 37016081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 26 - 235
Target Start/End: Original strand, 51663216 - 51663425
Alignment:
Q  26 tgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaag 125  Q
    |||||||| || |||||||||  |||| ||||||||| || | | |||| || ||||||||||||| ||||||||| | |||| | |    ||||||| |    
T  51663216 tgttcatgattagtgaatatcaaagtaagcaaacaaaagaatggggattgaacattcttaatggagctcacaaccatgcgatgaagccggctttagaatg 51663315  T
Q  126 acacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcgtacaaaaaatcttttgttaaatttgaag 225  Q
    |||||| ||||| ||||||||||||||||| | ||||||| ||||| | ||||||||||||||   | ||| | ||| |||| ||||| || ||||||||    
T  51663316 acacattcttgctggtagattaaaggaggaggacaagaagattgtacgcgacttgaccaagagcaagatgcttccaagaaatattttgatacatttgaag 51663415  T
Q  226 accaaaagac 235  Q
    | ||||||||    
T  51663416 aacaaaagac 51663425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 117 - 188
Target Start/End: Original strand, 5078984 - 5079055
Alignment:
Q  117 tttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagag 188  Q
    ||||||| ||||||| ||||| ||||||||||||||||| ||||||||| ||||| ||||||||||||||||    
T  5078984 tttagaaggacacattcttgccggtagattaaaggaggacggcaagaagattgtacgtgacttgaccaagag 5079055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 28 - 188
Target Start/End: Original strand, 20350416 - 20350576
Alignment:
Q  28 ttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagac 127  Q
    |||||| || ||| |||||  |||| ||||||||| || | | ||||||| |||||||||||||||||||||||    ||| | |    ||||||| |||    
T  20350416 ttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattaaacattcttaatggagttcacaaccatcccatggagccggctttagaaggac 20350515  T
Q  128 acatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagag 188  Q
    |||| ||||| ||||||||||||||||| | ||||||| | ||| ||||||||||||||||    
T  20350516 acattcttgccggtagattaaaggaggacgacaagaagatcgtacgtgacttgaccaagag 20350576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 28 - 188
Target Start/End: Complemental strand, 29355789 - 29355629
Alignment:
Q  28 ttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagac 127  Q
    |||||| || ||| |||||  |||| ||||||||| || | | |||| || |||||||||||||||||||||||    ||| | |    ||||||| |||    
T  29355789 ttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatcccatggagccggctttagaaggac 29355690  T
Q  128 acatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagag 188  Q
    |||| ||||| ||||||||||||||||| | ||||||| ||||| ||||||||||||||||    
T  29355689 acattcttgccggtagattaaaggaggacgacaagaagattgtacgtgacttgaccaagag 29355629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 28 - 188
Target Start/End: Original strand, 41454797 - 41454957
Alignment:
Q  28 ttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagac 127  Q
    |||||| || ||| |||||  |||| ||||||||| || | | |||| || |||||||||||||||||||||||    ||| | |    ||||||| |||    
T  41454797 ttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatcccatggagccggctttagaaggac 41454896  T
Q  128 acatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagag 188  Q
    |||| ||||| ||||||||||||||||| | ||||||| ||||| ||||||||||||||||    
T  41454897 acattcttgccggtagattaaaggaggacgacaagaagattgtacgtgacttgaccaagag 41454957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 28 - 188
Target Start/End: Complemental strand, 3947562 - 3947402
Alignment:
Q  28 ttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagac 127  Q
    |||||| || ||| |||||  |||| ||||||||| || | | |||| || |||||||||||||||||||||||    ||| | |    ||||||| |||    
T  3947562 ttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatcccatggagccggctttagaaggac 3947463  T
Q  128 acatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagag 188  Q
    |||| ||||| ||||||||||||||||| | ||||||| | ||| ||||||||||||||||    
T  3947462 acattcttgccggtagattaaaggaggacgacaagaagatcgtacgtgacttgaccaagag 3947402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 28 - 188
Target Start/End: Original strand, 3984073 - 3984233
Alignment:
Q  28 ttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagac 127  Q
    |||||| || ||| |||||  |||| ||||||||| || | | |||| || |||||||||||||||||||||||    ||| | |    ||||||| |||    
T  3984073 ttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatcccatggagccggctttagaaggac 3984172  T
Q  128 acatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagag 188  Q
    |||| ||||| ||||||||||||||||| | ||||||| | ||| ||||||||||||||||    
T  3984173 acattcttgccggtagattaaaggaggacgacaagaagatcgtacgtgacttgaccaagag 3984233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 79 - 235
Target Start/End: Original strand, 13174792 - 13174948
Alignment:
Q  79 attcttaatggagttcacaaccaagagatgtaacgaagtttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgact 178  Q
    ||||||||||||||||||||||| | |||| | |    ||||| | ||||||| || || ||||||||||||||||| | ||||||| ||||  ||||||    
T  13174792 attcttaatggagttcacaaccatgcgatggagccggctttaggaggacacattctcgctggtagattaaaggaggacgacaagaagattgttcgtgact 13174891  T
Q  179 tgaccaagagtttggtgcgtacaaaaaatcttttgttaaatttgaagaccaaaagac 235  Q
    ||||||||||   | ||| | ||| |||| ||||| || ||||||||| ||||||||    
T  13174892 tgaccaagagcaagatgcttccaataaatattttgatacatttgaagaacaaaagac 13174948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 28 - 188
Target Start/End: Complemental strand, 38775216 - 38775056
Alignment:
Q  28 ttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagac 127  Q
    |||||| || ||| |||||  |||| ||||||||| || | | |||| || |||||||||||||||||||||||    ||| | |    ||||||| |||    
T  38775216 ttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatcccatggagccggctttagaaggac 38775117  T
Q  128 acatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagag 188  Q
    |||| ||||| ||||||||||||||||| | ||||||| | ||| ||||||||||||||||    
T  38775116 acattcttgccggtagattaaaggaggacgacaagaagatcgtacgtgacttgaccaagag 38775056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 28 - 188
Target Start/End: Original strand, 44466542 - 44466702
Alignment:
Q  28 ttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagac 127  Q
    |||||| || ||| |||||  |||| ||||||||| || | | |||| || |||||||||||||||||||||||    ||| | |    ||||||| |||    
T  44466542 ttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatcccatggagccggctttagaaggac 44466641  T
Q  128 acatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagag 188  Q
    |||| ||||| ||||||||||||||||| | ||||||| | ||| ||||||||||||||||    
T  44466642 acattcttgccggtagattaaaggaggacgacaagaagatcgtacgtgacttgaccaagag 44466702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 28 - 188
Target Start/End: Complemental strand, 44620204 - 44620044
Alignment:
Q  28 ttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagac 127  Q
    |||||| || ||| |||||  |||| ||||||||| || | | |||| || |||||||||||||||||||||||    ||| | |    ||||||| |||    
T  44620204 ttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatcccatggagccggctttagaaggac 44620105  T
Q  128 acatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagag 188  Q
    |||| ||||| ||||||||||||||||| | ||||||| ||||| |||||||||| |||||    
T  44620104 acattcttgccggtagattaaaggaggacgacaagaagattgtacgtgacttgacaaagag 44620044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 28 - 188
Target Start/End: Original strand, 13630376 - 13630536
Alignment:
Q  28 ttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagac 127  Q
    |||||| || ||| |||||  |||| ||||||||| || | | |||| || |||||||||||||||||||||||    ||| | |    ||||||| |||    
T  13630376 ttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatcccatggagccggctttagaaggac 13630475  T
Q  128 acatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagag 188  Q
    |||| ||| | ||||||||||||||||| | ||||||| ||||| |||||||||| |||||    
T  13630476 acattctttccggtagattaaaggaggacgacaagaagattgtacgtgacttgacaaagag 13630536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 133 - 196
Target Start/End: Original strand, 39914002 - 39914065
Alignment:
Q  133 cttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgc 196  Q
    |||||| | ||||||| | |||||| ||||||| ||||| ||||||||||||||||||||||||    
T  39914002 cttgcgagaagattaatgaaggatgacaagaagattgtacgtgacttgaccaagagtttggtgc 39914065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 101; Significance: 3e-50; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 24 - 236
Target Start/End: Original strand, 20285965 - 20286177
Alignment:
Q  24 tatgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaa 123  Q
    ||||||||||||  ||| |||||||||||||||||||||||| | || | | || ||||||||||||||||||||||| | |||| | |    |||||||    
T  20285965 tatgttcatggtaagtggatatcttagtaggcaaacaaatgaatggaaactgaacattcttaatggagttcacaaccatgtgatggagccggctttagaa 20286064  T
Q  124 agacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcgtacaaaaaatcttttgttaaatttga 223  Q
     ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |||||||||  ||||| | ||| |||| |||||||||||||||    
T  20286065 ggacacatgcttgcgggtagattaaaggaggatgacaagaagattgtatgtgacttaaccaagagtaaggtgcttccaagaaatattttgttaaatttga 20286164  T
Q  224 agaccaaaagaca 236  Q
    ||| |||||||||    
T  20286165 agagcaaaagaca 20286177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 42 - 226
Target Start/End: Complemental strand, 23028654 - 23028463
Alignment:
Q  42 atatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagacacatgcttgcgggt 141  Q
    ||||||||||||| |||||||||||| |||||| |||||| ||||||||||||||||||| |||||| |   ||||||||||  ||||||||||||||||    
T  23028654 atatcttagtagggaaacaaatgattggagattgaatattattaatggagttcacaaccatgagatgaaggcaagtttagaagaacacatgcttgcgggt 23028555  T
Q  142 agattaaaggaggatggcaagaagcttgta-------tgtgacttgaccaagagtttggtgcgtacaaaaaatcttttgttaaatttgaaga 226  Q
    ||||||| |||||||| ||||||| |||||        |||||||||||||||||||| ||| | |||||||| |||| |||||||||||||    
T  23028554 agattaagggaggatgacaagaagattgtacatgattggtgacttgaccaagagtttgatgctttcaaaaaatattttattaaatttgaaga 23028463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 33 - 185
Target Start/End: Complemental strand, 13158130 - 13157978
Alignment:
Q  33 ggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagacacatg 132  Q
    |||||||| |||||||| || |||||||||||||| |||||| || ||||||||||||||||||||||| || ||| |   || |||| || ||| ||||    
T  13158130 ggttcgtggatatcttaataagcaaacaaatgattggagattgaacattcttaatggagttcacaaccatgaaatggagtcaaatttaaaaggacgcatg 13158031  T
Q  133 cttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaa 185  Q
    ||||||||||||||||||||||||| |||||| |||||||||||||| |||||    
T  13158030 cttgcgggtagattaaaggaggatgacaagaaacttgtatgtgacttcaccaa 13157978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 9 - 189
Target Start/End: Original strand, 20286449 - 20286630
Alignment:
Q  9 aagaatatgtaggtgtatgttcatggttc-gtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagat 107  Q
    ||||| |||| ||||||||||||||| |  ||| |||||||||||||||||||||||| | ||   | || ||||||||||||||| ||||||| | |||    
T  20286449 aagaaaatgtgggtgtatgttcatgggtaagtggatatcttagtaggcaaacaaatgaatggaacctgaacattcttaatggagtttacaaccatgtgat 20286548  T
Q  108 gtaacgaagtttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagt 189  Q
    | | |    ||||||| ||||||||||||||||||||||||||||||||| ||| ||| |||||  ||||||||||||||||    
T  20286549 ggagccggctttagaaggacacatgcttgcgggtagattaaaggaggatgacaaaaagattgtacatgacttgaccaagagt 20286630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 26 - 235
Target Start/End: Complemental strand, 18537439 - 18537230
Alignment:
Q  26 tgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaag 125  Q
    |||||||| || ||| |||||  |||| | ||||||| || | | |||| || ||||||||||||||||||||||| | |||  | | |  ||||||| |    
T  18537439 tgttcatgattagtggatatcaaagtaagaaaacaaaggaatggggattgaacattcttaatggagttcacaaccatgcgattgagccagctttagaagg 18537340  T
Q  126 acacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcgtacaaaaaatcttttgttaaatttgaag 225  Q
    |||||| ||||| ||||||||||||||||| | ||||||| ||||| |||||||||||||||||  | ||| | ||| |||| ||||| || ||||||||    
T  18537339 acacattcttgccggtagattaaaggaggacgacaagaagattgtacgtgacttgaccaagagtgagatgcttccaagaaatattttgatacatttgaag 18537240  T
Q  226 accaaaagac 235  Q
    | ||||||||    
T  18537239 aacaaaagac 18537230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 9 - 188
Target Start/End: Complemental strand, 1035670 - 1035491
Alignment:
Q  9 aagaatatgtaggtgtatgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatg 108  Q
    ||||| |||| ||||  |||||||| || ||| |||||  |||| ||||||||| || | | |||| || ||||||||||||||||||||||| |  |||    
T  1035670 aagaaaatgtgggtgcttgttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatgccatg 1035571  T
Q  109 taacgaagtttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagag 188  Q
     | |    ||||||| ||||||| ||||| ||||||||||||||||| | ||||||  ||||| ||||||||||||||||    
T  1035570 gagccggctttagaaggacacattcttgccggtagattaaaggaggacgacaagaatattgtacgtgacttgaccaagag 1035491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 117 - 188
Target Start/End: Complemental strand, 7020892 - 7020821
Alignment:
Q  117 tttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagag 188  Q
    ||||||| ||||||| ||||| ||||||||||||||||| | ||||||| ||||||||||||||||||||||    
T  7020892 tttagaaggacacattcttgccggtagattaaaggaggacgacaagaagattgtatgtgacttgaccaagag 7020821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 9 - 188
Target Start/End: Complemental strand, 25896221 - 25896042
Alignment:
Q  9 aagaatatgtaggtgtatgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatg 108  Q
    ||||| |||| ||||  |||||||| || ||| |||||  |||| ||||||||| || | | |||| || |||||||||||||||||||||||    |||    
T  25896221 aagaaaatgtgggtgcttgttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatcccatg 25896122  T
Q  109 taacgaagtttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagag 188  Q
     | |    ||||||| ||||||| ||||| ||||||||||||||||| | ||||||| ||||| ||||||||||||||||    
T  25896121 gagccggctttagaaggacacattcttgccggtagattaaaggaggacgacaagaagattgtacgtgacttgaccaagag 25896042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 9 - 188
Target Start/End: Complemental strand, 7800126 - 7799947
Alignment:
Q  9 aagaatatgtaggtgtatgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatg 108  Q
    ||||| |||| ||||  |||||||| || ||| |||||  |||| ||||||||| || | |  ||| || ||||||||||||||||||||||| | ||||    
T  7800126 aagaaaatgtgggtgcttgttcatgattagtggatatcaaagtaagcaaacaaaggaatgggaattgaacattcttaatggagttcacaaccatgcgatg 7800027  T
Q  109 taacgaagtttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagag 188  Q
     | |    ||||||| ||||||| ||||  |||||| |||||||||| | ||||||| ||||| ||||||||||||||||    
T  7800026 gagccggctttagaaggacacattcttgtcggtagactaaaggaggacgacaagaagattgtacgtgacttgaccaagag 7799947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 117 - 188
Target Start/End: Complemental strand, 27866857 - 27866786
Alignment:
Q  117 tttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagag 188  Q
    ||||||| ||||||| ||||| ||||||||||||||||| | ||||||| ||||| ||||||||||||||||    
T  27866857 tttagaaggacacattcttgccggtagattaaaggaggacgacaagaagattgtacgtgacttgaccaagag 27866786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 117 - 188
Target Start/End: Original strand, 34078829 - 34078900
Alignment:
Q  117 tttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagag 188  Q
    ||||||| ||||||| ||||| ||||||||||||||||| | ||||||| ||||| ||||||||||||||||    
T  34078829 tttagaaggacacattcttgccggtagattaaaggaggacgacaagaagattgtacgtgacttgaccaagag 34078900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 54 - 188
Target Start/End: Complemental strand, 13567177 - 13567043
Alignment:
Q  54 gcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagacacatgcttgcgggtagattaaaggag 153  Q
    ||||||||| || | | |||| || |||||||||||||||||||||||    ||| | | |  ||||||| ||||||| ||||| |||||||||||| ||    
T  13567177 gcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatcccatggagccagctttagaaggacacattcttgccggtagattaaagaag 13567078  T
Q  154 gatggcaagaagcttgtatgtgacttgaccaagag 188  Q
    || | ||||||| ||||| ||||||||||||||||    
T  13567077 gacgacaagaagattgtacgtgacttgaccaagag 13567043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 28 - 182
Target Start/End: Complemental strand, 38859291 - 38859137
Alignment:
Q  28 ttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagac 127  Q
    |||||| || ||| |||||  |||| ||||||||| || | |||||| || |||||||||||||||||||||||    ||| | |    ||||||| |||    
T  38859291 ttcatgattagtggatatcaaagtaagcaaacaaaagaatggagattgaacattcttaatggagttcacaaccatcccatggagccggctttagaaggac 38859192  T
Q  128 acatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgac 182  Q
    |||| ||||| ||||||||||||||||| | ||||||| ||||| ||||||||||    
T  38859191 acattcttgccggtagattaaaggaggacgacaagaagattgtacgtgacttgac 38859137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 79 - 188
Target Start/End: Complemental strand, 4202989 - 4202880
Alignment:
Q  79 attcttaatggagttcacaaccaagagatgtaacgaagtttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgact 178  Q
    ||||||||||||||||||||||| | |||| | |    ||||||| ||||||  ||||| ||||||||||||||||| | ||||||| ||||| ||||||    
T  4202989 attcttaatggagttcacaaccatgcgatggagccggctttagaaggacacactcttgccggtagattaaaggaggacgacaagaagattgtacgtgact 4202890  T
Q  179 tgaccaagag 188  Q
    ||| ||||||    
T  4202889 tgatcaagag 4202880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 28 - 182
Target Start/End: Complemental strand, 11032553 - 11032399
Alignment:
Q  28 ttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagac 127  Q
    |||||| || ||| |||||  |||| ||||||||| || | | |||| || |||||||||||||||||||||||    ||| | |    ||||||| |||    
T  11032553 ttcatgattagtggatatcaaagtaagcaaacaaaagaatggggattgaacattcttaatggagttcacaaccatcccatggagccggctttagaatgac 11032454  T
Q  128 acatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgac 182  Q
    |||| ||||| ||||||||||||||||| | ||||||| ||||| ||||||||||    
T  11032453 acattcttgccggtagattaaaggaggacgacaagaagattgtacgtgacttgac 11032399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 28 - 188
Target Start/End: Complemental strand, 37819978 - 37819818
Alignment:
Q  28 ttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagac 127  Q
    |||||| || ||| |||||  |||| ||||||||| || | | |||| || |||||||||||||||||||||||    ||| | |    ||||||| |||    
T  37819978 ttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatcccatggagccggctttagaaggac 37819879  T
Q  128 acatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagag 188  Q
    ||||  |||| ||||||||||||||||| | ||||||| | ||| ||||||||||||||||    
T  37819878 acattgttgccggtagattaaaggaggacgacaagaagatcgtacgtgacttgaccaagag 37819818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 133 - 188
Target Start/End: Complemental strand, 28885404 - 28885349
Alignment:
Q  133 cttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagag 188  Q
    ||||| ||||||||||||||||| | ||||||| ||||| |||||||||| |||||    
T  28885404 cttgccggtagattaaaggaggacgacaagaagattgtacgtgacttgacaaagag 28885349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 235
Target Start/End: Original strand, 1036424 - 1036518
Alignment:
Q  141 tagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcgtacaaaaaatcttttgttaaatttgaagaccaaaagac 235  Q
    ||||||||||||||| | ||||||  ||||| ||||||||||||||||   | ||| | ||| |||| ||||| || ||||||||| ||||||||    
T  1036424 tagattaaaggaggacgacaagaatattgtacgtgacttgaccaagagcaagatgcttccaagaaatattttgatacatttgaagaacaaaagac 1036518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 80; Significance: 1e-37; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 45 - 236
Target Start/End: Original strand, 6182653 - 6182844
Alignment:
Q  45 tcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagacacatgcttgcgggtaga 144  Q
    |||||||||| ||||||| |||| |||||| ||||||||| |||||||||||||||| |||||| | | |||||||||| |||| ||||||||  ||| |    
T  6182653 tcttagtagggaaacaaacgattggagattgaatattcttgatggagttcacaaccatgagatgaagccaagtttagaaggacatatgcttgcaagtata 6182752  T
Q  145 ttaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcgtacaaaaaatcttttgttaaatttgaagaccaaaagaca 236  Q
    |||| ||| | || ||||||  |||||  ||||||||||||||||||||||| | |||||||| ||||||||||||| ||||  ||||||||    
T  6182753 ttaagggatggtgacaagaaaattgtacatgacttgaccaagagtttggtgctttcaaaaaatattttgttaaattttaagagaaaaagaca 6182844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 9 - 188
Target Start/End: Complemental strand, 18580448 - 18580269
Alignment:
Q  9 aagaatatgtaggtgtatgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatg 108  Q
    ||||| |||| ||||  |||||||| || ||| |||||  |||| ||||||||| || |   ||||||| ||||||||||||||||||||||| |  |||    
T  18580448 aagaaaatgtgggtgcttgttcatgattagtggatatcaaagtaagcaaacaaaggaatgaggattaaacattcttaatggagttcacaaccatgcaatg 18580349  T
Q  109 taacgaagtttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagag 188  Q
     | |    ||||||| ||||||| ||||| | ||||||||||||||| | ||||||| ||||||||||||||||||||||    
T  18580348 aagccggctttagaatgacacattcttgccgatagattaaaggaggacgacaagaagattgtatgtgacttgaccaagag 18580269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 26 - 235
Target Start/End: Original strand, 4976713 - 4976922
Alignment:
Q  26 tgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaag 125  Q
    |||||||| || ||| |||||  |||| ||||||||| || | | |||| || |||||||||||||||  |||||| | |||| | |    |||||||||    
T  4976713 tgttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagtttgcaaccatgcgatggagccggctttagaaag 4976812  T
Q  126 acacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcgtacaaaaaatcttttgttaaatttgaag 225  Q
    |||||| ||||| |||||| |||||||||| | ||||||| ||||| ||||||||||||||||   | ||| | ||| |||| ||||| || ||||||||    
T  4976813 acacattcttgccggtagactaaaggaggacgacaagaagattgtacgtgacttgaccaagagcaagatgcttccaagaaatattttgatacatttgaag 4976912  T
Q  226 accaaaagac 235  Q
    | ||||||||    
T  4976913 aacaaaagac 4976922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 26 - 235
Target Start/End: Complemental strand, 4979057 - 4978848
Alignment:
Q  26 tgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaag 125  Q
    |||||||| || ||| |||||  |||| ||||||||| || | | |||| || |||||||||||||||| |||||| | |||| | |  | ||||||| |    
T  4979057 tgttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcccaaccatgcgatggagccgactttagaagg 4978958  T
Q  126 acacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcgtacaaaaaatcttttgttaaatttgaag 225  Q
    |||||| |||||  | ||| ||||||| || | ||||||| ||||| ||||||||||||||||   | ||| | ||| |||| ||||| || ||||||||    
T  4978957 acacattcttgccagcagactaaaggatgacgacaagaagattgtacgtgacttgaccaagagcaagatgcttccaagaaatattttgatacatttgaag 4978858  T
Q  226 accaaaagac 235  Q
    | ||||||||    
T  4978857 aacaaaagac 4978848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 116 - 188
Target Start/End: Original strand, 4769178 - 4769250
Alignment:
Q  116 gtttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagag 188  Q
    |||||||| ||||||| ||| | ||||||||||||||||| | ||||||| ||||| ||||||||||||||||    
T  4769178 gtttagaaggacacattcttaccggtagattaaaggaggacgacaagaagattgtacgtgacttgaccaagag 4769250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 28 - 188
Target Start/End: Original strand, 9890982 - 9891142
Alignment:
Q  28 ttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagac 127  Q
    |||||| || ||| |||||  |||| ||||||||| || | | |||| || |||||||||||||||||||||||    ||| | |    ||||||| |||    
T  9890982 ttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatcccatggagccggctttagaaggac 9891081  T
Q  128 acatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagag 188  Q
    |||| ||||| ||||||||||||||||| | ||||||| ||||| |||||||||| |||||    
T  9891082 acattcttgccggtagattaaaggaggacgacaagaagattgtacgtgacttgacaaagag 9891142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 79 - 235
Target Start/End: Original strand, 11502517 - 11502673
Alignment:
Q  79 attcttaatggagttcacaaccaagagatgtaacgaagtttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgact 178  Q
    ||||||||||||||||||| ||| | |||| | |    ||||||| ||||||| | ||| |||||||||||||| || | ||||||| ||||| ||||||    
T  11502517 attcttaatggagttcacacccatgcgatggagccggctttagaaggacacattcatgccggtagattaaaggaagacgacaagaagattgtacgtgact 11502616  T
Q  179 tgaccaagagtttggtgcgtacaaaaaatcttttgttaaatttgaagaccaaaagac 235  Q
    ||||||||||   | ||| | ||| |||| ||||| || ||||||||| ||||||||    
T  11502617 tgaccaagagcaagatgcttccaagaaatattttgatacatttgaagaacaaaagac 11502673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 125 - 188
Target Start/End: Complemental strand, 19072661 - 19072598
Alignment:
Q  125 gacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagag 188  Q
    ||||||| ||||| ||||||||||||||||| | ||||||| ||||| ||||||||||||||||    
T  19072661 gacacattcttgccggtagattaaaggaggacgacaagaagattgtacgtgacttgaccaagag 19072598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 9 - 188
Target Start/End: Original strand, 21471735 - 21471914
Alignment:
Q  9 aagaatatgtaggtgtatgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatg 108  Q
    ||||| |||| ||||  |||||||| || ||| |||||  |||| ||||||||| || | | |||| || |||||||||||||||||||||||    |||    
T  21471735 aagaaaatgtgggtgcttgttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatacaatg 21471834  T
Q  109 taacgaagtttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagag 188  Q
     |   || |||| |||||||||| ||||  | |||| |||||||||| | ||||||| ||||| ||||||||||||||||    
T  21471835 gagacaactttaaaaagacacattcttgaagatagaataaaggaggacgacaagaagattgtacgtgacttgaccaagag 21471914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 26 - 235
Target Start/End: Complemental strand, 51643603 - 51643392
Alignment:
Q  26 tgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagtt-cacaaccaagagatgtaacgaag-tttagaa 123  Q
    |||||||| || ||| |||||  |||| ||||||||| || | |||||| || ||||||||||||||| ||||| || | |||| | |   | |||| ||    
T  51643603 tgttcatgattagtggatatcaaagtaagcaaacaaaggaattgagattgaacattcttaatggagtttcacaaacatgcgatggagcccggctttataa 51643504  T
Q  124 agacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcgtacaaaaaatcttttgttaaatttga 223  Q
     ||||||| |||||  |||||||||||||||| | ||||||| ||||| ||||||||||||||||     ||| | |||||||| ||||| || ||||||    
T  51643503 ggacacattcttgccagtagattaaaggaggacgacaagaagattgtacgtgacttgaccaagagcaaaatgctttcaaaaaatattttgatacatttga 51643404  T
Q  224 agaccaaaagac 235  Q
    ||| ||||||||    
T  51643403 agaacaaaagac 51643392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 101
Target Start/End: Original strand, 17140530 - 17140622
Alignment:
Q  9 aagaatatgtaggtgtatgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaacca 101  Q
    ||||| |||| | ||| ||||||||||| ||| |||||  |||||||||||||| || | | |||| || |||||||||||||||||||||||    
T  17140530 aagaaaatgtggatgtttgttcatggttagtggatatcaaagtaggcaaacaaaggaatggggattgaacattcttaatggagttcacaacca 17140622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 28 - 188
Target Start/End: Complemental strand, 49565565 - 49565405
Alignment:
Q  28 ttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagac 127  Q
    |||||| || ||| |||||  |||| ||||||||| || | | |||| || |||||||||||||||||||||||    ||| | |    ||||||| |||    
T  49565565 ttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatcccatggagccggctttagaaggac 49565466  T
Q  128 acatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagag 188  Q
    |||| ||||| | ||||||||||||||| | ||||||| | ||| ||||||||||||||||    
T  49565465 acattcttgccgatagattaaaggaggacgacaagaagatcgtacgtgacttgaccaagag 49565405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 117 - 188
Target Start/End: Original strand, 3404839 - 3404910
Alignment:
Q  117 tttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagag 188  Q
    ||||||| ||||||| |||||  |||||||||||||||| | ||||||| ||||| |||||||||| |||||    
T  3404839 tttagaaggacacattcttgccagtagattaaaggaggacgacaagaagattgtacgtgacttgacaaagag 3404910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 117 - 188
Target Start/End: Original strand, 41024248 - 41024319
Alignment:
Q  117 tttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagag 188  Q
    ||||||| ||||||| ||||| ||||||||||||||||| |  |||||| ||||| |||||||||| |||||    
T  41024248 tttagaaggacacattcttgcaggtagattaaaggaggacgaaaagaagattgtacgtgacttgacaaagag 41024319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 101
Target Start/End: Complemental strand, 38463917 - 38463825
Alignment:
Q  9 aagaatatgtaggtgtatgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaacca 101  Q
    ||||| |||| ||||  |||||||| || ||| |||||  |||| ||||||||| || | | |||| || |||||||||||||||||||||||    
T  38463917 aagaaaatgtgggtgcttgttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaacca 38463825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 72; Significance: 7e-33; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 25 - 236
Target Start/End: Complemental strand, 17997276 - 17997065
Alignment:
Q  25 atgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaa 124  Q
    ||||||| |||| ||| |||||||||||| |||||||| || | |||||| || |||||| ||| ||||| |||||| | |||| | |    |||||||     
T  17997276 atgttcaaggttagtggatatcttagtagacaaacaaaggaatggagattgaacattcttcatgaagttcgcaaccatgcgatggagccggctttagaag 17997177  T
Q  125 gacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcgtacaaaaaatcttttgttaaatttgaa 224  Q
    ||||||||||||| |||||||||||||||||||  |||||| ||||| ||||||||||||||||   ||||| | ||| |||| ||||| ||||||||||    
T  17997176 gacacatgcttgctggtagattaaaggaggatgataagaagattgtacgtgacttgaccaagagcaaggtgcttccaagaaatattttgataaatttgaa 17997077  T
Q  225 gaccaaaagaca 236  Q
    || |||||||||    
T  17997076 gagcaaaagaca 17997065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 9 - 188
Target Start/End: Complemental strand, 12907612 - 12907433
Alignment:
Q  9 aagaatatgtaggtgtatgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatg 108  Q
    ||||| |||| ||||  |||||||| || ||| |||||  |||| ||||||||| || | |||||| || ||||||||||||||||||||||| | ||||    
T  12907612 aagaaaatgtgggtgcttgttcatgattagtggatatcaaagtaagcaaacaaaggaatggagattgaacattcttaatggagttcacaaccatgcgatg 12907513  T
Q  109 taacgaagtttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagag 188  Q
     | |    ||||||| ||||||| ||||| ||||||||||||||||| | ||||||| ||||| ||||||||||||||||    
T  12907512 gagccggctttagaaggacacattcttgccggtagattaaaggaggacgacaagaagattgtacgtgacttgaccaagag 12907433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 9 - 235
Target Start/End: Complemental strand, 41008100 - 41007874
Alignment:
Q  9 aagaatatgtaggtgtatgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatg 108  Q
    ||||| |||| ||||  |||||||| || ||| |||||  |||| ||||||||| || |   |||| || ||||||||||||||||||||||| | ||||    
T  41008100 aagaaaatgtgggtgcttgttcatgattagtggatatcaaagtaagcaaacaaaggaatgaggattgaacattcttaatggagttcacaaccatgcgatg 41008001  T
Q  109 taacgaagtttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcgtacaaaaaatc 208  Q
    || |    ||||||| ||||||| ||||| ||||||||||||||||| | ||||||| ||||| ||||||||||||||||   | ||| | ||| ||||     
T  41008000 tagccggctttagaatgacacattcttgccggtagattaaaggaggacgacaagaagattgtacgtgacttgaccaagagcaagatgcttccaagaaata 41007901  T
Q  209 ttttgttaaatttgaagaccaaaagac 235  Q
    ||||| || ||||||||| ||||||||    
T  41007900 ttttgatacatttgaagaacaaaagac 41007874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 49 - 235
Target Start/End: Original strand, 436292 - 436478
Alignment:
Q  49 agtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagacacatgcttgcgggtagattaa 148  Q
    |||| ||||||||| || | | |||| || ||||||||||||||||||||||| | |||| | |    ||||||| ||||||| ||||| ||||||||||    
T  436292 agtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatgcgatggagccggctttagaaggacacattcttgccggtagattaa 436391  T
Q  149 aggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcgtacaaaaaatcttttgttaaatttgaagaccaaaagac 235  Q
    ||||||| | ||||||| ||||| ||||||||||||||||   | ||| | ||| |||| ||||| || ||||||||| ||||||||    
T  436392 aggaggacgacaagaagattgtacgtgacttgaccaagagcaagatgcttccaagaaatattttgatacatttgaagaacaaaagac 436478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 9 - 188
Target Start/End: Complemental strand, 11692934 - 11692755
Alignment:
Q  9 aagaatatgtaggtgtatgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatg 108  Q
    ||||| |||| ||||  |||||||| || ||| |||||  |||| ||||||||| || |   |||| || ||||||||||||||||||||||| | |||     
T  11692934 aagaaaatgtgggtgcttgttcatgattagtggatatcaaagtaagcaaacaaaggaatgaggattgaacattcttaatggagttcacaaccatgtgatc 11692835  T
Q  109 taacgaagtttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagag 188  Q
     | |  | ||||||| ||||||| ||||| ||||||||||||||||| | ||||||| ||||| ||||||||||||||||    
T  11692834 gagccgactttagaaggacacattcttgccggtagattaaaggaggacgacaagaagattgtacgtgacttgaccaagag 11692755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 9 - 235
Target Start/End: Complemental strand, 43949402 - 43949176
Alignment:
Q  9 aagaatatgtaggtgtatgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatg 108  Q
    ||||| |||| ||||  |||||||| || ||| |||||  |||| ||||||||| || | | |||| || ||| ||||||||||||||||||| | || |    
T  43949402 aagaaaatgtgggtgcttgttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattattaatggagttcacaaccatgcgaag 43949303  T
Q  109 taacgaagtttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcgtacaaaaaatc 208  Q
     | |    ||||||| ||||||| ||||| ||||||||||||||||| ||||||||| |||||  |||||||||||||||   | ||| | ||| ||||     
T  43949302 gagccggctttagaaggacacattcttgccggtagattaaaggaggacggcaagaagattgtacatgacttgaccaagagcaagatgcttccaagaaata 43949203  T
Q  209 ttttgttaaatttgaagaccaaaagac 235  Q
    ||||| || ||||||||| ||||||||    
T  43949202 ttttgatacatttgaagaacaaaagac 43949176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 28 - 188
Target Start/End: Original strand, 7263992 - 7264152
Alignment:
Q  28 ttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagac 127  Q
    |||||| || ||| |||||  |||| ||||||||| || | | |||| || |||||||||||||||||||||||    ||| |||    ||||||| |||    
T  7263992 ttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatctcatggaaccggctttagaaggac 7264091  T
Q  128 acatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagag 188  Q
    |||| ||||| ||||||||||||||||| | ||||||| ||||| ||||||||||||||||    
T  7264092 acattcttgccggtagattaaaggaggacgacaagaagattgtacgtgacttgaccaagag 7264152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 117 - 188
Target Start/End: Complemental strand, 3802578 - 3802507
Alignment:
Q  117 tttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagag 188  Q
    ||||||| ||||||| ||||| ||||||||||||||||| | ||||||| ||||| ||||||||||||||||    
T  3802578 tttagaaggacacattcttgccggtagattaaaggaggacgacaagaagattgtacgtgacttgaccaagag 3802507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 117 - 188
Target Start/End: Complemental strand, 27275372 - 27275301
Alignment:
Q  117 tttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagag 188  Q
    ||||||| ||||||| ||||| ||||||||||||||||| | ||||||| ||||| ||||||||||||||||    
T  27275372 tttagaaggacacattcttgccggtagattaaaggaggacgacaagaagattgtacgtgacttgaccaagag 27275301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 9 - 184
Target Start/End: Complemental strand, 28355022 - 28354847
Alignment:
Q  9 aagaatatgtaggtgtatgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatg 108  Q
    ||||| |||| ||||  |||||||| || ||| |||||  |||| ||||||||| || | | |||| || ||||||||||||||||| ||||| | ||||    
T  28355022 aagaaaatgtgggtgcttgttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcataaccatgcgatg 28354923  T
Q  109 taacgaagtttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgacca 184  Q
     | |    ||||||| ||||||| ||||| |||||| |||||||||| | ||||||| ||||| ||||||||||||    
T  28354922 gagcctgctttagaatgacacattcttgctggtagactaaaggaggacgacaagaagattgtacgtgacttgacca 28354847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 117 - 188
Target Start/End: Original strand, 45476407 - 45476478
Alignment:
Q  117 tttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagag 188  Q
    ||||||| ||||||| ||||| ||||||||||||||||| | ||||||| ||||| ||||||||||||||||    
T  45476407 tttagaaggacacattcttgccggtagattaaaggaggacgacaagaagattgtacgtgacttgaccaagag 45476478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 235
Target Start/End: Original strand, 24750599 - 24750825
Alignment:
Q  9 aagaatatgtaggtgtatgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatg 108  Q
    ||||| |||| ||||  |||||||| || ||| |||||  |||| ||||||||| || | | |||| || |||||||||||||||||||||||    |||    
T  24750599 aagaaaatgtgggtgcttgttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatcccatg 24750698  T
Q  109 taacgaagtttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcgtacaaaaaatc 208  Q
     | |    ||||||| ||||||| ||||| ||||||||||||||||||| ||||||| |||||  ||| |||||| ||||   | ||| | ||| ||||     
T  24750699 gagccggatttagaaggacacattcttgccggtagattaaaggaggatgacaagaagattgtacatgaattgaccgagagcaagatgcttccaagaaata 24750798  T
Q  209 ttttgttaaatttgaagaccaaaagac 235  Q
    ||||| || ||||||||| ||||||||    
T  24750799 ttttgatacatttgaagaacaaaagac 24750825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 26 - 235
Target Start/End: Complemental strand, 24605192 - 24604983
Alignment:
Q  26 tgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaag 125  Q
    |||||||| || ||| |||||  |||| ||||||||| || | | |||| || ||||||||||||||||||||||| | |||| | |    |||||||      
T  24605192 tgttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatgcgatggagccggctttagaagt 24605093  T
Q  126 acacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcgtacaaaaaatcttttgttaaatttgaag 225  Q
    |||||| ||||  |||||| |||||||||| | ||||||  ||||| ||||||||||||||||   | ||| | ||| |||| ||||| || ||||||||    
T  24605092 acacattcttgtcggtagactaaaggaggacgacaagaaaattgtacgtgacttgaccaagagcaagatgcttccaagaaatattttgatacatttgaag 24604993  T
Q  226 accaaaagac 235  Q
    | ||||||||    
T  24604992 aacaaaagac 24604983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 28 - 188
Target Start/End: Complemental strand, 212542 - 212382
Alignment:
Q  28 ttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagac 127  Q
    |||||| || ||| |||||  |||| ||||||||| || | | |||| || |||||||||||||||||||||||    ||| | |    ||||||| |||    
T  212542 ttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatcccatggagccggctttagaaggac 212443  T
Q  128 acatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagag 188  Q
    |||| ||||| ||||||||||||||||| | ||||||| | ||| ||||||||||||||||    
T  212442 acattcttgccggtagattaaaggaggacgacaagaagatcgtacgtgacttgaccaagag 212382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 28 - 188
Target Start/End: Complemental strand, 10623555 - 10623395
Alignment:
Q  28 ttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagac 127  Q
    |||||| || ||| |||||  |||| ||||||||| || | | |||| || |||||||||||||||||||||||    ||| | |    ||||||| |||    
T  10623555 ttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatcccatggagccggctttagaaggac 10623456  T
Q  128 acatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagag 188  Q
    |||| ||||| ||||||||||||||||| | ||||||| | ||| ||||||||||||||||    
T  10623455 acattcttgccggtagattaaaggaggacgacaagaagatcgtacgtgacttgaccaagag 10623395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 117 - 188
Target Start/End: Original strand, 5348216 - 5348287
Alignment:
Q  117 tttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagag 188  Q
    ||||||| ||||||| ||||| ||||||||||||||||| | ||||||| | ||| ||||||||||||||||    
T  5348216 tttagaaggacacattcttgccggtagattaaaggaggacgacaagaagatcgtacgtgacttgaccaagag 5348287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 117 - 188
Target Start/End: Original strand, 41561061 - 41561132
Alignment:
Q  117 tttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagag 188  Q
    ||||||| ||||||| ||||| ||||||||||||||||| | ||||||| | ||| ||||||||||||||||    
T  41561061 tttagaaggacacattcttgccggtagattaaaggaggacgacaagaagatcgtacgtgacttgaccaagag 41561132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 117 - 235
Target Start/End: Complemental strand, 34920794 - 34920676
Alignment:
Q  117 tttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcgtacaaaaaatcttttgtta 216  Q
    ||||||| ||||||| ||| | |||| |||||||||||| | ||||||| ||||| ||||||||||||||||   | ||| | ||| |||| ||||| ||    
T  34920794 tttagaaggacacattcttaccggtaaattaaaggaggacgacaagaagattgtacgtgacttgaccaagagcaagatgcttccaagaaatattttgata 34920695  T
Q  217 aatttgaagaccaaaagac 235  Q
     ||||||||| ||||||||    
T  34920694 catttgaagaacaaaagac 34920676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 28 - 188
Target Start/End: Original strand, 38946723 - 38946883
Alignment:
Q  28 ttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagac 127  Q
    |||||| || ||| |||||  |||| ||||||||| || | | |||| || |||||||||||||||||||||||    ||| | |    ||||||| |||    
T  38946723 ttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatcccatggagccggctttagaaggac 38946822  T
Q  128 acatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagag 188  Q
    |||| ||||| |||||||||||||||||   ||||||| | ||| ||||||||||||||||    
T  38946823 acattcttgccggtagattaaaggaggacaacaagaagatcgtacgtgacttgaccaagag 38946883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 28 - 182
Target Start/End: Original strand, 39794930 - 39795084
Alignment:
Q  28 ttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagac 127  Q
    |||||| || ||| |||||  |||| ||||||||| || | | |||| || |||||||||||||||||||||||    ||| | |    ||||||| | |    
T  39794930 ttcatgattagtggatatcaaagtaagcaaacaaaagaatggggattgaacattcttaatggagttcacaaccatcccatggagccggctttagaagggc 39795029  T
Q  128 acatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgac 182  Q
    |||| ||||| ||||||||||||||||| | ||||||| ||||| ||||||||||    
T  39795030 acattcttgccggtagattaaaggaggacgacaagaagattgtacgtgacttgac 39795084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 170
Target Start/End: Complemental strand, 1100203 - 1100042
Alignment:
Q  9 aagaatatgtaggtgtatgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatg 108  Q
    ||||| |||| ||||  |||||||| || ||| |||||  |||| ||||||||| || | | |||| || ||||||||||||||||||||||| | ||||    
T  1100203 aagaaaatgtgggtgcttgttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatgcgatg 1100104  T
Q  109 taacgaagtttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgt 170  Q
     | |    ||||||  ||||||| ||||| | ||||||||||||||| | ||||||| ||||    
T  1100103 gagccggctttagatggacacattcttgccgatagattaaaggaggacgacaagaagattgt 1100042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 99
Target Start/End: Complemental strand, 34920892 - 34920802
Alignment:
Q  9 aagaatatgtaggtgtatgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaac 99  Q
    ||||| |||| ||||  |||||||| || ||| |||||  |||| ||||||||| || | |||||| || |||||||||||||||||||||    
T  34920892 aagaaaatgtgggtgcttgttcatgattagtggatatcaaagtaagcaaacaaaggaatggagattgaacattcttaatggagttcacaac 34920802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 7e-30; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 9 - 235
Target Start/End: Original strand, 8400527 - 8400753
Alignment:
Q  9 aagaatatgtaggtgtatgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatg 108  Q
    ||||| |||| ||||  ||||||||||| ||| ||||||||||||||||||||| || | | |||| || ||| | ||||||||||||||||| | ||||    
T  8400527 aagaaaatgtgggtgcttgttcatggttagtggatatcttagtaggcaaacaaaagaatggggattgaacattttcaatggagttcacaaccatgcgatg 8400626  T
Q  109 taacgaagtttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcgtacaaaaaatc 208  Q
     | |    ||||||| ||||||| ||||| |||| |||||||||||||| ||||||| ||||| ||||||||||||||||   | ||    ||||||||     
T  8400627 gagccggctttagaaggacacattcttgctggtacattaaaggaggatgacaagaagattgtaggtgacttgaccaagagcaagatgttaccaaaaaata 8400726  T
Q  209 ttttgttaaatttgaagaccaaaagac 235  Q
    ||||| |||||||||||| ||||||||    
T  8400727 ttttgataaatttgaagaacaaaagac 8400753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 9 - 235
Target Start/End: Complemental strand, 43827726 - 43827500
Alignment:
Q  9 aagaatatgtaggtgtatgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatg 108  Q
    ||||| |||| ||||| ||||||||||| ||| |||||||||||| |||||||| || | | |||| || ||||||||||||||||||||||| | || |    
T  43827726 aagaaaatgtgggtgtttgttcatggttagtggatatcttagtagacaaacaaaggaatggggattgaacattcttaatggagttcacaaccatgcgaag 43827627  T
Q  109 taacgaagtttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcgtacaaaaaatc 208  Q
     | | |  ||||||| ||||||| ||| | ||||||||||||||||| |  |||||| ||||| |||||||||||||| |   | ||| | ||| ||||     
T  43827626 gagccagctttagaatgacacattcttaccggtagattaaaggaggacgaaaagaagattgtacgtgacttgaccaagtgcaagatgcttccaagaaata 43827527  T
Q  209 ttttgttaaatttgaagaccaaaagac 235  Q
    ||||| |||||||||||| ||||||||    
T  43827526 ttttgataaatttgaagaacaaaagac 43827500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 9 - 235
Target Start/End: Original strand, 47061824 - 47062050
Alignment:
Q  9 aagaatatgtaggtgtatgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatg 108  Q
    ||||| |||| ||||  |||||||| || ||| |||||  |||| ||||||||| || |   |||| || ||||||||||||||||||||||| | ||||    
T  47061824 aagaaaatgtgggtgcttgttcatgattagtggatatcaaagtaagcaaacaaaggaatgaggattgaacattcttaatggagttcacaaccatgcgatg 47061923  T
Q  109 taacgaagtttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcgtacaaaaaatc 208  Q
     | |  | ||| ||| ||||||| ||||| ||||||||||||||||| | ||| ||| ||||||||||||||||||||||   | ||| | ||| ||||     
T  47061924 gagccgacttttgaaggacacattcttgccggtagattaaaggaggacgacaaaaagattgtatgtgacttgaccaagagcaagatgcttccaagaaata 47062023  T
Q  209 ttttgttaaatttgaagaccaaaagac 235  Q
    ||||| || ||||||||| ||||||||    
T  47062024 ttttgatacatttgaagaacaaaagac 47062050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 9 - 156
Target Start/End: Original strand, 21799953 - 21800100
Alignment:
Q  9 aagaatatgtaggtgtatgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatg 108  Q
    ||||| |||| |||| |||||||||||| ||| ||||||||||||| |||||||  | | |||||| || ||| ||||||||||||||||||| | ||||    
T  21799953 aagaaaatgtgggtgcatgttcatggttagtggatatcttagtaggaaaacaaagcaatggagattgaacattgttaatggagttcacaaccatgcgatg 21800052  T
Q  109 taacgaagtttagaaagacacatgcttgcgggtagattaaaggaggat 156  Q
     |      ||||||| |||||||| |||  ||||||||||||||||||    
T  21800053 gagtcggctttagaaggacacatgtttgtcggtagattaaaggaggat 21800100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 28 - 188
Target Start/End: Complemental strand, 617850 - 617690
Alignment:
Q  28 ttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagac 127  Q
    |||||| || ||| |||||  |||| ||||||||| || | | |||| || |||||||||||||||||||||||    ||| | |    ||||||| |||    
T  617850 ttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatcccatggagccggctttagaaggac 617751  T
Q  128 acatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagag 188  Q
    |||| ||||| ||||||||||||||||| | ||||||| | ||| ||||||||||||||||    
T  617750 acattcttgccggtagattaaaggaggacgacaagaagatcgtacgtgacttgaccaagag 617690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 28 - 188
Target Start/End: Original strand, 18106348 - 18106508
Alignment:
Q  28 ttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagac 127  Q
    |||||| || ||| |||||  |||| ||||||||| || | | |||| || |||||||||||||||||||||||    ||| | |    ||||||| |||    
T  18106348 ttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatcccatggagccggctttagaaggac 18106447  T
Q  128 acatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagag 188  Q
    |||| ||||| ||||||||||||||||| | ||||||| ||||| |||||||||| |||||    
T  18106448 acattcttgcaggtagattaaaggaggacgacaagaagattgtacgtgacttgacaaagag 18106508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 28 - 188
Target Start/End: Original strand, 30787499 - 30787659
Alignment:
Q  28 ttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagac 127  Q
    |||||| || ||| |||||  |||| ||||||||| || | | |||| || |||||||||||||||||||||||    ||| | |    ||||||| |||    
T  30787499 ttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatcccatggagccggctttagaaggac 30787598  T
Q  128 acatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagag 188  Q
    |||| ||||| ||||||||||||||||| | ||||||| | ||| ||||||||||||||||    
T  30787599 acattcttgccggtagattaaaggaggacgacaagaagatcgtacgtgacttgaccaagag 30787659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 28 - 188
Target Start/End: Complemental strand, 43623236 - 43623076
Alignment:
Q  28 ttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagac 127  Q
    |||||| || ||| |||||  |||| ||||||||| || | | |||| || |||||||||||||||||||||||    ||| | |    ||||||| |||    
T  43623236 ttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatcccatggagccggctttagaaggac 43623137  T
Q  128 acatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagag 188  Q
    |||| ||||| ||||||||||||||||| | ||||||| | ||| ||||||||||||||||    
T  43623136 acattcttgccggtagattaaaggaggacgacaagaagatcgtacgtgacttgaccaagag 43623076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 28 - 188
Target Start/End: Original strand, 45764339 - 45764499
Alignment:
Q  28 ttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagac 127  Q
    |||||| || ||| |||||  |||| ||||||||| || | | |||| || |||||||||||||||||||||||    ||| | |    ||||||| |||    
T  45764339 ttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatcccatggagccggctttagaatgac 45764438  T
Q  128 acatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagag 188  Q
    |||| ||||| ||||||||||||||||| | ||||||| | ||| ||||||||||||||||    
T  45764439 acattcttgccggtagattaaaggaggacgacaagaagatcgtacgtgacttgaccaagag 45764499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 117 - 188
Target Start/End: Original strand, 15060662 - 15060733
Alignment:
Q  117 tttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagag 188  Q
    ||||||| ||||||| ||||| ||||||||||||||||| | ||||||| ||||| |||||||||| |||||    
T  15060662 tttagaaggacacattcttgccggtagattaaaggaggacgacaagaagattgtaagtgacttgacaaagag 15060733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 28 - 187
Target Start/End: Original strand, 42500367 - 42500526
Alignment:
Q  28 ttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagac 127  Q
    |||||| || ||| |||||  |||| ||||||||| || | |||||| || |||||||||||||||||||||||    ||| | |    ||||||| ||     
T  42500367 ttcatgattagtggatatcaaagtaagcaaacaaaggaatggagattgaacattcttaatggagttcacaaccatcccatggagccggctttagaaggaa 42500466  T
Q  128 acatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaaga 187  Q
    |||| ||||| ||||||||||||||||| | ||||||| ||||| |||||||||| ||||    
T  42500467 acattcttgccggtagattaaaggaggacgacaagaagattgtacgtgacttgacaaaga 42500526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 78 - 196
Target Start/End: Complemental strand, 20908568 - 20908450
Alignment:
Q  78 tattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgac 177  Q
    |||||||||||||||||||||||| |||| |     ||  |||||| | ||||| ||||| || ||||||| |||||||| ||||||| ||||  |||||    
T  20908568 tattcttaatggagttcacaaccatgagacgacggcaatgttagaagggcacattcttgcaggaagattaagggaggatgacaagaagattgtgcgtgac 20908469  T
Q  178 ttgaccaagagtttggtgc 196  Q
    || ||||||||||||||||    
T  20908468 tttaccaagagtttggtgc 20908450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 225
Target Start/End: Original strand, 3761964 - 3762062
Alignment:
Q  127 cacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcgtacaaaaaatcttttgttaaatttgaag 225  Q
    |||||||||| ||| ||||||| ||| |||| ||| ||| || || || ||||||||||||||||| |||   |||||||| ||||| | |||||||||    
T  3761964 cacatgcttgagggaagattaagggaagatgacaaaaagattctaggtaacttgaccaagagtttgatgcagccaaaaaatattttgatgaatttgaag 3762062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 226
Target Start/End: Complemental strand, 16794600 - 16794516
Alignment:
Q  142 agattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcgtacaaaaaatcttttgttaaatttgaaga 226  Q
    ||||||| |||||| | ||||||| |||||  |||||||||||| |||||||||    |||||||| |||||  |||||||||||    
T  16794600 agattaatggaggacgacaagaagattgtacatgacttgaccaatagtttggtgaaaccaaaaaatattttgacaaatttgaaga 16794516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 4e-25; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 9 - 235
Target Start/End: Original strand, 7168841 - 7169067
Alignment:
Q  9 aagaatatgtaggtgtatgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatg 108  Q
    ||||| |||| ||||  ||||||||||| ||| |||||  |||||||||||||| || | | |||| || ||||||||||||||||||||||| | ||||    
T  7168841 aagaaaatgtgggtgcttgttcatggttagtggatatcaaagtaggcaaacaaaggagtggggattgaacattcttaatggagttcacaaccatgcgatg 7168940  T
Q  109 taacgaagtttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcgtacaaaaaatc 208  Q
     | |  | ||||||| || |||| |||||  |||||||||||||||| | ||||| | ||||| ||||||||||||||||   | ||| | ||| ||||     
T  7168941 gagccgactttagaaggatacattcttgctagtagattaaaggaggacgacaagatgattgtacgtgacttgaccaagagcaagatgcttccaagaaata 7169040  T
Q  209 ttttgttaaatttgaagaccaaaagac 235  Q
    ||||| || ||||||||| ||||||||    
T  7169041 ttttgatacatttgaagaacaaaagac 7169067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 26 - 235
Target Start/End: Complemental strand, 35965848 - 35965639
Alignment:
Q  26 tgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaag 125  Q
    |||||||| || ||| |||||  |||| ||||||||| || | | |||| || ||||||||||||||||||||||| | |||| | |    ||||||| |    
T  35965848 tgttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatgcgatggagccggctttagaagg 35965749  T
Q  126 acacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcgtacaaaaaatcttttgttaaatttgaag 225  Q
    |||||| ||||| ||||||||||||||||| | ||||||| ||||| ||||||||||||||||   | ||| | ||| |||| ||||| || ||||||||    
T  35965748 acacattcttgccggtagattaaaggaggacgacaagaagattgtacgtgacttgaccaagagcaagatgcttccaagaaatattttgatacatttgaag 35965649  T
Q  226 accaaaagac 235  Q
    | ||||||||    
T  35965648 aacaaaagac 35965639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 9 - 188
Target Start/End: Original strand, 45455317 - 45455496
Alignment:
Q  9 aagaatatgtaggtgtatgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatg 108  Q
    ||||| |||| ||||  |||||||| || ||| |||||  |||| ||||||||| || | | ||||  | ||||||||||||||| ||||||| | ||||    
T  45455317 aagaaaatgtgggtgcttgttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattggacattcttaatggagttaacaaccatgcgatg 45455416  T
Q  109 taacgaagtttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagag 188  Q
     | |  | ||||||| ||||||| ||||| ||||||||||||||||| | ||||||| ||||| ||||||||||||||||    
T  45455417 gagccgactttagaaggacacattcttgccggtagattaaaggaggacgacaagaagattgtacgtgacttgaccaagag 45455496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 9 - 235
Target Start/End: Complemental strand, 39752148 - 39751922
Alignment:
Q  9 aagaatatgtaggtgtatgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatg 108  Q
    ||||| |||| | ||| |||||||| || ||| |||||  |||| |||||||||||| | | |||| || ||||||||||||||||||||||| |  |||    
T  39752148 aagaaaatgtggatgtttgttcatgattggtggatatcaaagtaagcaaacaaatgaatggggattgaacattcttaatggagttcacaaccatgcaatg 39752049  T
Q  109 taacgaagtttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcgtacaaaaaatc 208  Q
     |||    ||||||| |||| ||   ||| ||||||||||||||||| | ||||||| ||||| ||||||||||||||||   | ||| | ||| ||||     
T  39752048 gaaccggctttagaatgacatatttatgccggtagattaaaggaggacgacaagaagattgtacgtgacttgaccaagagcaagatgcttccaagaaata 39751949  T
Q  209 ttttgttaaatttgaagaccaaaagac 235  Q
    ||||| || ||||||||| ||||||||    
T  39751948 ttttgatacatttgaagaacaaaagac 39751922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 79 - 188
Target Start/End: Original strand, 22580914 - 22581023
Alignment:
Q  79 attcttaatggagttcacaaccaagagatgtaacgaagtttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgact 178  Q
    ||||||||||||||| ||||||| | |||| | |  | ||||||| ||||||| ||||| ||||||||||||||||| | ||||||| ||||| ||||||    
T  22580914 attcttaatggagtttacaaccatgcgatggagccgactttagaaggacacattcttgccggtagattaaaggaggacgacaagaagattgtacgtgact 22581013  T
Q  179 tgaccaagag 188  Q
    ||||||||||    
T  22581014 tgaccaagag 22581023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 9 - 225
Target Start/End: Complemental strand, 14401894 - 14401676
Alignment:
Q  9 aagaatatgtaggtgtatgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatg 108  Q
    ||||| |||| ||||| |||||| | | | || |||| |||||||| ||||||| |||| ||  ||   |||||||||||||||||||||||| ||  ||    
T  14401894 aagaaaatgtgggtgtgtgttcaagttgcatggatatgttagtagggaaacaaaggattggaagttggctattcttaatggagttcacaaccatgaattg 14401795  T
Q  109 taacgaagtttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgta--tgtgacttgaccaagagtttggtgcgtacaaaaaa 206  Q
       | |||||||||| | ||||| ||||| || ||||||| ||| |||| ||||||| |||||  | |||||||||||||||||||||||   |||||||    
T  14401794 gtgccaagtttagaatggcacattcttgcaggaagattaagggatgatgacaagaagattgtacatatgacttgaccaagagtttggtgccaccaaaaaa 14401695  T
Q  207 tcttttgttaaatttgaag 225  Q
    | ||||| | |||||||||    
T  14401694 tattttgatgaatttgaag 14401676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 9 - 188
Target Start/End: Complemental strand, 43689291 - 43689112
Alignment:
Q  9 aagaatatgtaggtgtatgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatg 108  Q
    ||||| |||| ||||  |||||||| || ||| |||||  |||| ||||||||| || | | |||| || ||||||||||||||||||||||| | ||||    
T  43689291 aagaaaatgtgggtgcttgttcatgattagtggatatcaaagtaagcaaacaaaggaatggggatttaacattcttaatggagttcacaaccatgcgatg 43689192  T
Q  109 taacgaagtttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagag 188  Q
     |      ||||||| ||||||| ||||| ||||||||||| ||||| | ||||||| ||||| ||||||||||||||||    
T  43689191 gagtcggctttagaaggacacattcttgccggtagattaaaagaggacgacaagaagattgtacgtgacttgaccaagag 43689112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 26 - 235
Target Start/End: Original strand, 43370725 - 43370934
Alignment:
Q  26 tgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaag 125  Q
    |||||||| || ||| |||||  |||| ||||||||| || | | | || || ||||||||||||||||||||||| | |||| |      ||||||| |    
T  43370725 tgttcatgattagtggatatcaaagtaagcaaacaaaggaatggggtttgaacattcttaatggagttcacaaccatgcgatggagtcggctttagaagg 43370824  T
Q  126 acacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcgtacaaaaaatcttttgttaaatttgaag 225  Q
    |||||| ||||| |||||| |||||||||| | ||||||| ||||| ||||||||||||||||   | ||| | ||| |||| ||||| || ||||||||    
T  43370825 acacattcttgccggtagactaaaggaggacgacaagaagattgtacgtgacttgaccaagagcaagatgcttccaagaaatattttgatacatttgaag 43370924  T
Q  226 accaaaagac 235  Q
    | ||||||||    
T  43370925 aacaaaagac 43370934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 49 - 171
Target Start/End: Complemental strand, 2146070 - 2145948
Alignment:
Q  49 agtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagacacatgcttgcgggtagattaa 148  Q
    |||| |||||||||||| | |||||| || ||| ||||||||||||||||||| | |||| | |  | ||||||| |||| || ||||| ||||||||||    
T  2146070 agtaagcaaacaaatgaatggagattgaacatttttaatggagttcacaaccatgcgatggagccgactttagaaggacatattcttgccggtagattaa 2145971  T
Q  149 aggaggatggcaagaagcttgta 171  Q
    ||||||| | ||||||| |||||    
T  2145970 aggaggacgacaagaagattgta 2145948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 28 - 188
Target Start/End: Original strand, 7341039 - 7341199
Alignment:
Q  28 ttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagac 127  Q
    |||||| || ||| |||||  |||| ||||||||| || | | |||| || |||||||||||||||||||||||    ||| | |    ||||||| |||    
T  7341039 ttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatcccatggagccggctttagaaggac 7341138  T
Q  128 acatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagag 188  Q
    |||| ||||| ||||||||||||||||| | ||||||| | ||| ||||||||||||||||    
T  7341139 acattcttgccggtagattaaaggaggacgacaagaagatcgtacgtgacttgaccaagag 7341199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 28 - 188
Target Start/End: Complemental strand, 8422957 - 8422797
Alignment:
Q  28 ttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagac 127  Q
    |||||| || ||| |||||  |||| ||||||||| || | | ||||||| ||||||||||||||||||||| |    ||| | |    ||||||| |||    
T  8422957 ttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattaaacattcttaatggagttcacaactatcccatggagccggctttagaatgac 8422858  T
Q  128 acatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagag 188  Q
    |||| ||||| ||||||||||||||||| | ||||||| | ||| ||||||||||||||||    
T  8422857 acattcttgccggtagattaaaggaggacgacaagaagatcgtacgtgacttgaccaagag 8422797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 28 - 188
Target Start/End: Complemental strand, 30304711 - 30304551
Alignment:
Q  28 ttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagac 127  Q
    |||||| || ||| |||||  |||| ||||||||| || | | |||| || |||||||||||||||||||||||    ||| | |    ||||||| |||    
T  30304711 ttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatcccatggagccggctttagaaggac 30304612  T
Q  128 acatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagag 188  Q
    |||| ||||| ||||||||||||||||| | ||||||| | ||| ||||||||||||||||    
T  30304611 acattcttgccggtagattaaaggaggacgacaagaagatcgtacgtgacttgaccaagag 30304551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 28 - 188
Target Start/End: Complemental strand, 32378009 - 32377849
Alignment:
Q  28 ttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagac 127  Q
    |||||| || ||| |||||  |||| ||||||||| || | | |||| || |||||||||||||||||||||||    ||| | |    ||||||| |||    
T  32378009 ttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatcccatggagccggctttagaaggac 32377910  T
Q  128 acatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagag 188  Q
    |||| ||||| ||||||||||||||||| | ||||||| | ||| ||||||||||||||||    
T  32377909 acattcttgccggtagattaaaggaggacgacaagaagatcgtacgtgacttgaccaagag 32377849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 28 - 188
Target Start/End: Complemental strand, 32431966 - 32431806
Alignment:
Q  28 ttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagac 127  Q
    |||||| || ||| |||||  |||| ||||||||| || | | |||| || |||||||||||||||||||||||    ||| | |    ||||||| |||    
T  32431966 ttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatcccatggagccggctttagaaggac 32431867  T
Q  128 acatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagag 188  Q
    |||| ||||| ||||||||||||||||| | ||||||| | ||| ||||||||||||||||    
T  32431866 acattcttgccggtagattaaaggaggacgacaagaagatcgtacgtgacttgaccaagag 32431806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 117 - 188
Target Start/End: Original strand, 1115821 - 1115892
Alignment:
Q  117 tttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagag 188  Q
    ||||||| ||||||| ||||| ||||||||||||||||| | ||||||| | ||| ||||||||||||||||    
T  1115821 tttagaaggacacattcttgccggtagattaaaggaggacgacaagaagatagtacgtgacttgaccaagag 1115892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0219 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 9 - 235
Target Start/End: Original strand, 17010 - 17236
Alignment:
Q  9 aagaatatgtaggtgtatgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatg 108  Q
    ||||| |||| ||||  |||||||| || ||| |||||  |||| ||||||||| || | | |||| || ||||||||||||||||||||||| | ||||    
T  17010 aagaaaatgtgggtgcttgttcatgattagtggatatcaaagtaagcaaacaaaggaatagggattgaacattcttaatggagttcacaaccatgcgatg 17109  T
Q  109 taacgaagtttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcgtacaaaaaatc 208  Q
     | |    ||||||| ||||||| ||||| |||||| |||||||||| | ||||||| ||||| ||||||||||||||||   | ||| | ||| ||||     
T  17110 gagccggctttagaaggacacattcttgccggtagactaaaggaggacgacaagaagattgtaagtgacttgaccaagagcaagatgcttccaagaaata 17209  T
Q  209 ttttgttaaatttgaagaccaaaagac 235  Q
    ||||| || ||||||||| ||||||||    
T  17210 ttttgatacatttgaagaacaaaagac 17236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 6e-21; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 9 - 188
Target Start/End: Original strand, 18606937 - 18607116
Alignment:
Q  9 aagaatatgtaggtgtatgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatg 108  Q
    ||||| |||| ||||  |||||||| || ||| |||||  |||| ||||||||| || | | |||| || ||||||||||||||||||||||| | ||||    
T  18606937 aagaaaatgtgggtgcttgttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatgcgatg 18607036  T
Q  109 taacgaagtttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagag 188  Q
     | |  | ||||||| ||||||| ||||  | ||||||||||||||| | ||||||| ||||| ||||||||||||||||    
T  18607037 gagccgactttagaaggacacattcttgtcgatagattaaaggaggacgacaagaagattgtacgtgacttgaccaagag 18607116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 79 - 188
Target Start/End: Original strand, 31147333 - 31147442
Alignment:
Q  79 attcttaatggagttcacaaccaagagatgtaacgaagtttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgact 178  Q
    ||||||||||||||||||||||| | |||| | |  | ||||||| ||||||| ||||| ||||||||||||||| ||| ||||||| ||||| ||||||    
T  31147333 attcttaatggagttcacaaccatgcgatggagccgactttagaaggacacattcttgccggtagattaaaggagaatgacaagaagattgtacgtgact 31147432  T
Q  179 tgaccaagag 188  Q
    ||| ||||||    
T  31147433 tgatcaagag 31147442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 9 - 188
Target Start/End: Original strand, 24220107 - 24220286
Alignment:
Q  9 aagaatatgtaggtgtatgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatg 108  Q
    ||||| |||| ||||  ||| ||||||| ||| ||||||||||||| |||||||||| | | |||| || |||||||||| |||||||||||| | ||||    
T  24220107 aagaaaatgtgggtgcttgtccatggttagtggatatcttagtaggaaaacaaatgaatggggattgaaaattcttaatgcagttcacaaccatgcgatg 24220206  T
Q  109 taacgaagtttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagag 188  Q
     |      ||||||| ||||||| ||||  ||||||||||||||||| | ||||||  || || ||||||||||||||||    
T  24220207 gagtcggctttagaaggacacattcttgtcggtagattaaaggaggacgacaagaaaattatacgtgacttgaccaagag 24220286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 26 - 188
Target Start/End: Original strand, 7362137 - 7362299
Alignment:
Q  26 tgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaag 125  Q
    |||||||| || ||| |||||  |||| ||||||||| || |   |||| || ||||||||||||||||||||||| | |||| |    | ||||||| |    
T  7362137 tgttcatgattagtggatatcaaagtaagcaaacaaaggaatgtggattgaacattcttaatggagttcacaaccatgcgatggagtcgactttagaatg 7362236  T
Q  126 acacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagag 188  Q
    |||||| ||||| |||||| |||||||||| | ||||||| ||||| ||||||||||||||||    
T  7362237 acacattcttgccggtagactaaaggaggacgacaagaagattgtacgtgacttgaccaagag 7362299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 28 - 188
Target Start/End: Original strand, 28250856 - 28251016
Alignment:
Q  28 ttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagac 127  Q
    |||||| || ||| |||||  |||| ||||||||| || | | |||| || |||||||||||||||||||||||    ||| | | |  ||||||| |||    
T  28250856 ttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatcccatggagccagctttagaaggac 28250955  T
Q  128 acatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagag 188  Q
    |||| ||||| | ||||||||||||||| | ||||||| ||||| ||||||||||||||||    
T  28250956 acattcttgccgatagattaaaggaggacgacaagaagattgtacgtgacttgaccaagag 28251016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 49 - 235
Target Start/End: Complemental strand, 29288028 - 29287842
Alignment:
Q  49 agtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagacacatgcttgcgggtagattaa 148  Q
    |||| ||||||||| || | | |||| || ||||||||||||||||||||||| | |||| |      |||| || ||||||| ||||| |||||| |||    
T  29288028 agtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatgcgatggagtcggctttataaggacacattcttgccggtagactaa 29287929  T
Q  149 aggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcgtacaaaaaatcttttgttaaatttgaagaccaaaagac 235  Q
    ||||||| | ||||||| ||||| ||||||||||||||||   | ||| | ||| |||| ||||| || ||||||||| ||||||||    
T  29287928 aggaggacgacaagaagattgtacgtgacttgaccaagagcaagatgcttccaagaaatattttgatacatttgaagaacaaaagac 29287842  T

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Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 28 - 188
Target Start/End: Complemental strand, 1611852 - 1611692
Alignment:
Q  28 ttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagac 127  Q
    |||||| || ||| |||||  |||| ||||||||| || | | |||| || |||||||||||||||||||||||    ||| | |    ||||||| |||    
T  1611852 ttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatcccatggagccggctttagaaggac 1611753  T
Q  128 acatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagag 188  Q
    |||| ||||| ||||||||||||||||| | ||||||| | ||| ||||||||||||||||    
T  1611752 acattcttgccggtagattaaaggaggacgacaagaagatcgtacgtgacttgaccaagag 1611692  T

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Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 78 - 193
Target Start/End: Complemental strand, 34111713 - 34111598
Alignment:
Q  78 tattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgac 177  Q
    |||||||||||||||||||||||| ||||||   | ||  |||||| |  | || ||||| || ||||||||||| |||| | ||||| ||||| |||||    
T  34111713 tattcttaatggagttcacaaccatgagatggcgccaaagttagaagggaaaattcttgcaggaagattaaaggaagatgactagaagattgtacgtgac 34111614  T
Q  178 ttgaccaagagtttgg 193  Q
    ||||||||||||||||    
T  34111613 ttgaccaagagtttgg 34111598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 117 - 235
Target Start/End: Complemental strand, 21358359 - 21358241
Alignment:
Q  117 tttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcgtacaaaaaatcttttgtta 216  Q
    ||||||| ||||||| ||||| | ||||||||||||||| | ||||||| |||||  |||||||||||||||   | ||| | ||| |||| ||||| ||    
T  21358359 tttagaaggacacattcttgccgatagattaaaggaggacgacaagaagattgtacatgacttgaccaagagcaagatgcttccaagaaatattttgata 21358260  T
Q  217 aatttgaagaccaaaagac 235  Q
     ||||||||| ||||||||    
T  21358259 catttgaagaacaaaagac 21358241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 117 - 235
Target Start/End: Complemental strand, 23962341 - 23962223
Alignment:
Q  117 tttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcgtacaaaaaatcttttgtta 216  Q
    ||||||| ||||||| ||||| | ||||||||||||||| | ||||||| |||||  |||||||||||||||   | ||| | ||| |||| ||||| ||    
T  23962341 tttagaaggacacattcttgccgatagattaaaggaggacgacaagaagattgtacatgacttgaccaagagcaagatgcttccaagaaatattttgata 23962242  T
Q  217 aatttgaagaccaaaagac 235  Q
     ||||||||| ||||||||    
T  23962241 catttgaagaacaaaagac 23962223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 101
Target Start/End: Original strand, 35243544 - 35243636
Alignment:
Q  9 aagaatatgtaggtgtatgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaacca 101  Q
    ||||| |||| ||||  |||||||| || ||| |||||  |||| |||||||||||| | | |||| || |||||||||||||||||||||||    
T  35243544 aagaaaatgtgggtgcttgttcatgattagtggatatcaaagtaagcaaacaaatgaatggggattgaacattcttaatggagttcacaacca 35243636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 101
Target Start/End: Complemental strand, 13387795 - 13387722
Alignment:
Q  28 ttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaacca 101  Q
    |||||| |||||| |||||  |||| ||||||||| || | | |||| || |||||||||||||||||||||||    
T  13387795 ttcatgattcgtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaacca 13387722  T

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Target: scaffold0341 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 117 - 188
Target Start/End: Complemental strand, 16369 - 16298
Alignment:
Q  117 tttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagag 188  Q
    ||||||| ||||||| ||||| ||||||||||||||||| | ||||||| ||||| ||||||||||||||||    
T  16369 tttagaaggacacattcttgccggtagattaaaggaggaagacaagaagattgtacgtgacttgaccaagag 16298  T

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Target: scaffold0340 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0340
Description:

Target: scaffold0340; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 9 - 188
Target Start/End: Complemental strand, 290 - 111
Alignment:
Q  9 aagaatatgtaggtgtatgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatg 108  Q
    ||||| |||| ||||  |||||||| || ||| |||||  |||| ||||||||| || | | |||| || ||||||||||||||||||||||| | ||||    
T  290 aagaaaatgtgggtgcttgttcatgattagtggatatcaaagtaagcaaacaaaggaatggtgattgaacattcttaatggagttcacaaccatgcgatg 191  T
Q  109 taacgaagtttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagag 188  Q
     | |    ||||||| ||||||| ||| || ||||| |||||||| | | ||||||| ||||| ||||||||||||||||    
T  190 gagccggctttagaaggacacattcttacgagtagactaaaggagaacgacaagaagattgtacgtgacttgaccaagag 111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 235
Target Start/End: Original strand, 12203 - 12429
Alignment:
Q  9 aagaatatgtaggtgtatgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatg 108  Q
    ||||| |||| ||||  |||||||| || ||| |||||  |||| ||||||||| || | | |||| || ||||||||||||||||| ||||| |  |||    
T  12203 aagaaaatgtgggtgcttgttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcaaaaccatgccatg 12302  T
Q  109 taacgaagtttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcgtacaaaaaatc 208  Q
     | |    ||||||| ||||||| ||| | |||||||||| |||||| | ||||||| ||||| ||||||||||||||||   | ||| | ||| ||||     
T  12303 gagctggctttagaaggacacattctttccggtagattaatggaggacgacaagaagattgtacgtgacttgaccaagagaaagatgcttccaagaaata 12402  T
Q  209 ttttgttaaatttgaagaccaaaagac 235  Q
    ||||| || ||||||||| ||||||||    
T  12403 ttttgatacatttgaagaacaaaagac 12429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0494 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0494
Description:

Target: scaffold0494; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 28 - 188
Target Start/End: Original strand, 1841 - 2001
Alignment:
Q  28 ttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagac 127  Q
    |||||| || ||| |||||  |||| ||||||||| || | | |||| || |||||||||||||||||||||||    ||| | |    ||||||| |||    
T  1841 ttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatcccatggagccggctttagaaggac 1940  T
Q  128 acatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagag 188  Q
    |||| ||||| ||||||||||||||||| | ||||||| | ||| ||||||||||||||||    
T  1941 acattcttgccggtagattaaaggaggacgacaagaagatcgtacgtgacttgaccaagag 2001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0101 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0101
Description:

Target: scaffold0101; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 28 - 188
Target Start/End: Original strand, 33769 - 33929
Alignment:
Q  28 ttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagac 127  Q
    |||||| || ||| |||||  |||| ||||||||| || | | |||| || |||||||||||||||||||||||    ||| | |    ||||||| |||    
T  33769 ttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatcccatggagccggctttagaaggac 33868  T
Q  128 acatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagag 188  Q
    |||| ||||| ||||||||||||||||| | ||||||| | ||| ||||||||||||||||    
T  33869 acattcttgccggtagattaaaggaggacgacaagaagatcgtacgtgacttgaccaagag 33929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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