View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11386A_low_41 (Length: 421)

Name: NF11386A_low_41
Description: NF11386A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11386A_low_41
NF11386A_low_41
[»] scaffold0466 (1 HSPs)
scaffold0466 (7-412)||(4173-4579)
[»] chr8 (15 HSPs)
chr8 (9-394)||(25809392-25809781)
chr8 (274-412)||(25622137-25622275)
chr8 (7-91)||(25622055-25622139)
chr8 (155-273)||(22881700-22881818)
chr8 (65-274)||(20707046-20707254)
chr8 (141-274)||(12843479-12843613)
chr8 (64-273)||(15753002-15753209)
chr8 (155-273)||(19342153-19342271)
chr8 (155-273)||(19371651-19371769)
chr8 (208-275)||(10516408-10516475)
chr8 (196-274)||(10252854-10252932)
chr8 (9-71)||(15177504-15177565)
chr8 (156-273)||(15748384-15748499)
chr8 (7-75)||(20706977-20707046)
chr8 (155-231)||(18530387-18530463)
[»] chr7 (9 HSPs)
chr7 (43-225)||(10677571-10677753)
chr7 (29-150)||(23135023-23135145)
chr7 (114-265)||(6414845-6414996)
chr7 (155-256)||(23655472-23655573)
chr7 (164-259)||(16427968-16428063)
chr7 (158-275)||(7666239-7666356)
chr7 (156-225)||(10646489-10646558)
chr7 (65-122)||(19650613-19650670)
chr7 (149-253)||(4122590-4122694)
[»] chr4 (9 HSPs)
chr4 (156-274)||(12285758-12285876)
chr4 (156-273)||(24715645-24715762)
chr4 (7-271)||(35150100-35150376)
chr4 (167-274)||(20748642-20748749)
chr4 (155-225)||(23692972-23693042)
chr4 (7-75)||(17743804-17743873)
chr4 (29-68)||(16404213-16404253)
chr4 (7-75)||(20748472-20748541)
chr4 (171-231)||(8677234-8677294)
[»] chr1 (9 HSPs)
chr1 (140-274)||(20816885-20817018)
chr1 (50-187)||(12892953-12893089)
chr1 (155-268)||(36754874-36754987)
chr1 (7-71)||(12900397-12900463)
chr1 (156-225)||(22669063-22669132)
chr1 (7-75)||(34488414-34488483)
chr1 (156-225)||(40817022-40817091)
chr1 (158-206)||(12889285-12889333)
chr1 (174-274)||(17048052-17048152)
[»] chr3 (10 HSPs)
chr3 (46-271)||(2120102-2120327)
chr3 (156-215)||(4698636-4698695)
chr3 (156-285)||(23528329-23528457)
chr3 (168-236)||(14426903-14426971)
chr3 (155-218)||(4668164-4668227)
chr3 (156-231)||(20311365-20311440)
chr3 (174-231)||(5797930-5797988)
chr3 (174-231)||(9796548-9796605)
chr3 (156-212)||(10686948-10687004)
chr3 (155-231)||(27686139-27686215)
[»] chr2 (8 HSPs)
chr2 (156-274)||(35511819-35511937)
chr2 (156-231)||(18115064-18115139)
chr2 (155-273)||(24386338-24386456)
chr2 (155-225)||(27483828-27483898)
chr2 (155-221)||(26712906-26712972)
chr2 (166-236)||(27765314-27765384)
chr2 (62-94)||(16748227-16748259)
chr2 (155-231)||(21538469-21538545)
[»] chr5 (5 HSPs)
chr5 (43-84)||(19990723-19990764)
chr5 (158-268)||(11848263-11848373)
chr5 (156-218)||(16687130-16687192)
chr5 (205-274)||(24558950-24559019)
chr5 (205-274)||(24599982-24600051)
[»] scaffold0003 (2 HSPs)
scaffold0003 (164-259)||(16681-16776)
scaffold0003 (164-259)||(30827-30922)
[»] chr6 (4 HSPs)
chr6 (198-231)||(30701124-30701157)
chr6 (156-264)||(13002079-13002187)
chr6 (156-268)||(14761267-14761378)
chr6 (158-231)||(19255349-19255424)


Alignment Details
Target: scaffold0466 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: scaffold0466
Description:

Target: scaffold0466; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 7 - 412
Target Start/End: Complemental strand, 4579 - 4173
Alignment:
Q  7 tgatgcatcttctgttcagatatttaactttttgttacctttcttcagatcatcttctaagtcttcagagcttctcttgggtaccaaaatgctttcattt 106  Q
    ||||||||||||| |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  4579 tgatgcatcttctattcaaatatttaactttttgttgcctttcttcagatcatcttctaagtcttcagagcttctcttgggtaccaaaatactttcattt 4480  T
Q  107 ttctttagagcttgatgtttcaaaatcaatgagttgactatgaattcggaattt-aattatatggtcttgcacactcgaacatacattaaagtatccaat 205  Q
    |||||||||||||||||||||||||||||| |||||||||||||||  |||||| |||||||||||| ||||||||||||||||||||| ||||||||||    
T  4479 ttctttagagcttgatgtttcaaaatcaataagttgactatgaatttagaattttaattatatggtcctgcacactcgaacatacattagagtatccaat 4380  T
Q  206 tgttcttttatactttgttaacatcagaatcatatagacattgttctaaaatccactttggtttaacaaccttttcctttcactggaatcctgtaatcac 305  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||    
T  4379 tgttattttatactttgttaacatcagaatcatatagacattgttctaaaacccactttggtttaacaaccttttcctttcactggaatcctataatcac 4280  T
Q  306 aaccaaacgagacattttcacttattgattcatgaaaatccacaaacatgatcgttttcccaatcaaaggtagtttgcacaattgtcaaggtacaatgaa 405  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  4279 aaccaaacgagacattttcacttattgattcatgaaaatccacaaacatgatcgttttcccacacaaaggtagtttgcacaattgtcaaggtacaatgaa 4180  T
Q  406 tattctt 412  Q
    | |||||    
T  4179 ttttctt 4173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 240; Significance: 1e-133; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 9 - 394
Target Start/End: Original strand, 25809392 - 25809781
Alignment:
Q  9 atgcatcttctgttcagatatttaactttttgttacctttcttcagatcatcttctaagtcttcaga---gcttctcttggg-taccaaaatgctttcat 104  Q
    ||||||||||||||||||||||| ||||||||||  ||||||||| |||||||||||||||||||||   |||||||||||| |||||||||||||||||    
T  25809392 atgcatcttctgttcagatatttgactttttgttgtctttcttcaaatcatcttctaagtcttcagaagagcttctcttggggtaccaaaatgctttcat 25809491  T
Q  105 ttttctttagagcttgatgtttcaaaatcaatgagttgactatgaattcggaatttaattatatggtcttgcacactcgaacatacattaaagtatccaa 204  Q
    || |||||||||||||||||||||||| |||| | ||||||||||| |||| |||||||||||| |||  ||||||||||||| |||||| |||||||||    
T  25809492 ttgtctttagagcttgatgtttcaaaagcaataacttgactatgaagtcgggatttaattatatagtccggcacactcgaacacacattagagtatccaa 25809591  T
Q  205 ttgttcttttatactttgttaacatcagaatcatatagacattgttctaaaatccactttggtttaacaaccttttcctttcactggaatcctgtaatca 304  Q
    || |||||||||||||||||||||||| || ||||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||| | ||||||    
T  25809592 ttattcttttatactttgttaacatcaaaaccatatagacattgttctaaaacccactttggatcaacaaccttttcctttcactggaatcttataatca 25809691  T
Q  305 caaccaaacgagacattttcacttattgattcatgaaaatccacaaacatgatcgttttcccaatcaaaggtagtttgcacaattgtcaa 394  Q
    |||||||| |||||||||||| |||| |||||||||||||||| ||||||||| ||||| |||  |||||||||||||||| ||||||||    
T  25809692 caaccaaatgagacattttcatttatggattcatgaaaatccaaaaacatgattgttttgccacacaaaggtagtttgcaccattgtcaa 25809781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 274 - 412
Target Start/End: Original strand, 25622137 - 25622275
Alignment:
Q  274 accttttcctttcactggaatcctgtaatcacaaccaaacgagacattttcacttattgattcatgaaaatccacaaacatgatcgttttcccaatcaaa 373  Q
    |||||||||||| ||||||||| | |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||  |||||||||| ||||    
T  25622137 accttttcctttaactggaatcttataatcacaaccaaatgagacattttcacttatcgattcatgaaaatccacaaacatgactgttttcccaaacaaa 25622236  T
Q  374 ggtagtttgcacaattgtcaaggtacaatgaatattctt 412  Q
    ||||||||||||  |||||||||||| |||||| |||||    
T  25622237 ggtagtttgcacctttgtcaaggtacgatgaattttctt 25622275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 7 - 91
Target Start/End: Original strand, 25622055 - 25622139
Alignment:
Q  7 tgatgcatcttctgttcagatatttaactttttgttacctttcttcagatcatcttctaagtcttcagagcttctcttgggtacc 91  Q
    ||||||||||| |||||| |||||| |||||||||| ||||||||| ||||| ||||||||||||||||||||||||| ||||||    
T  25622055 tgatgcatcttttgttcaaatatttgactttttgttgcctttcttctgatcaccttctaagtcttcagagcttctctttggtacc 25622139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 155 - 273
Target Start/End: Original strand, 22881700 - 22881818
Alignment:
Q  155 gaatttaattatatggtcttgcacactcgaacatacattaaagtatccaattgttcttttatactttgttaacatcagaatcatatagacattgttctaa 254  Q
    |||||||||||||||||| | |||||| ||||| |||||| |||||||||||||||||| |||  || ||| ||||| || | || ||||||||||||||    
T  22881700 gaatttaattatatggtcatacacactagaacacacattagagtatccaattgttctttcatatattattatcatcaaaaccttagagacattgttctaa 22881799  T
Q  255 aatccactttggtttaaca 273  Q
    ||  |||||||||| ||||    
T  22881800 aactcactttggttcaaca 22881818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 65 - 274
Target Start/End: Original strand, 20707046 - 20707254
Alignment:
Q  65 aagtcttcagagcttctcttgggtaccaaaatgctttcatttttctttagagcttgatgtttcaaaatcaatgagttgactatgaattcggaatttaatt 164  Q
    ||||||||| |||||||| || ||||||||||||||||||||   || |||| ||||||| | | || |||  | |||||| |||| ||   |||| |||    
T  20707046 aagtcttcatagcttctcatgagtaccaaaatgctttcatttacattcagagtttgatgtattagaaccaaa-acttgactttgaagtcatgatttgatt 20707144  T
Q  165 atatggtcttgcacactcgaacatacattaaagtatccaattgttcttttatactttgttaacatcagaatcatatagacattgttctaaaatccacttt 264  Q
    |||||||| | |||||| ||||| |||||| |||||| ||||||||||| | || |||||| |||   || | ||||||||||||| |||||  ||||||    
T  20707145 atatggtcctacacacttgaacacacattagagtatctaattgttctttcaaacattgttatcatttaaaccttatagacattgttttaaaactcacttt 20707244  T
Q  265 ggtttaacaa 274  Q
    |||| |||||    
T  20707245 ggttcaacaa 20707254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 141 - 274
Target Start/End: Original strand, 12843479 - 12843613
Alignment:
Q  141 tgactatgaattcggaatttaattatatggtcttgcacactcgaacatacattaaagtatccaattgttcttttatactttgttaacatcagaatcatat 240  Q
    ||||| |||| || |||||||||||||||||| |||||||| ||||| ||||||  |||||||||| |||||| |||| || ||| ||||| ||   ||     
T  12843479 tgactttgaagtcagaatttaattatatggtcctgcacacttgaacacacattagcgtatccaattattctttcatacattattatcatcaaaactctag 12843578  T
Q  241 agacattgttct-aaaatccactttggtttaacaa 274  Q
    ||||| |||||| |||||||| ||||||| |||||    
T  12843579 agacactgttctaaaaatccattttggttcaacaa 12843613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 64 - 273
Target Start/End: Original strand, 15753002 - 15753209
Alignment:
Q  64 taagtcttcagagcttctcttgggtaccaaaatgctttcatttttctttagagcttgatgtttcaaaatcaatgagttgactatgaattcggaatttaat 163  Q
    |||||||||| ||||| ||||| |||||||  ||||||| |||   || |||||||||| | ||| || |||| |  ||||| |||| ||  ||||||||    
T  15753002 taagtcttcatagcttttcttgagtaccaacgtgctttcctttgggttcagagcttgatatatcataaccaataacatgactttgaagtcaaaatttaat 15753101  T
Q  164 tatatggtcttgcacactcgaacatacattaaagtatccaattgttcttttatactttgttaacatcagaatcatatagacattgttctaaaatccactt 263  Q
    ||||||||| | || | |||| |   |||||||||| ||||||||||||  |||| |||||| ||| | |||| || |||| ||||||||||||||| ||    
T  15753102 tatatggtcatccatattcgagct--cattaaagtacccaattgttcttacatacattgttatcataaaaatcttagagactttgttctaaaatccaatt 15753199  T
Q  264 tggtttaaca 273  Q
    ||||| ||||    
T  15753200 tggttcaaca 15753209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 155 - 273
Target Start/End: Complemental strand, 19342271 - 19342153
Alignment:
Q  155 gaatttaattatatggtcttgcacactcgaacatacattaaagtatccaattgttcttttatactttgttaacatcagaatcatatagacattgttctaa 254  Q
    |||||||||| ||||||  |||||||| ||||| |||||   ||||||||||||||||| |||| |||||| ||||| ||   || ||||||||||||||    
T  19342271 gaatttaattttatggtactgcacacttgaacacacatttgtgtatccaattgttctttcatacattgttatcatcaaaactttagagacattgttctaa 19342172  T
Q  255 aatccactttggtttaaca 273  Q
    ||  |||||||||| ||||    
T  19342171 aactcactttggttcaaca 19342153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 155 - 273
Target Start/End: Complemental strand, 19371769 - 19371651
Alignment:
Q  155 gaatttaattatatggtcttgcacactcgaacatacattaaagtatccaattgttcttttatactttgttaacatcagaatcatatagacattgttctaa 254  Q
    |||||||||| | ||||  |||||||| ||||| |||||   ||||||||||||||||| |||| |||||| ||||| ||   || ||||||||||||||    
T  19371769 gaatttaattttgtggtactgcacacttgaacacacatttgtgtatccaattgttctttcatacattgttatcatcaaaactttagagacattgttctaa 19371670  T
Q  255 aatccactttggtttaaca 273  Q
    ||  |||||||||| ||||    
T  19371669 aactcactttggttcaaca 19371651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 208 - 275
Target Start/End: Complemental strand, 10516475 - 10516408
Alignment:
Q  208 ttcttttatactttgttaacatcagaatcatatagacattgttctaaaatccactttggtttaacaac 275  Q
    |||||| |||| |||||| ||||| |||| |||| |||||||||||||| ||||||| ||| ||||||    
T  10516475 ttctttcatacattgttatcatcaaaatcttataaacattgttctaaaacccactttagttcaacaac 10516408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 196 - 274
Target Start/End: Original strand, 10252854 - 10252932
Alignment:
Q  196 agtatccaattgttcttttatactttgttaacatcagaatcatatagacattgttctaaaatccactttggtttaacaa 274  Q
    |||||| |||| ||||| ||||| ||||||  |||| || | || |||||||||||||||||| ||||||||| |||||    
T  10252854 agtatctaatttttcttctatacattgttataatcaaaaccttaaagacattgttctaaaatctactttggttcaacaa 10252932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 71
Target Start/End: Complemental strand, 15177565 - 15177504
Alignment:
Q  9 atgcatcttctgttcagatatttaactttttgttacctttcttcagatcatcttctaagtctt 71  Q
    |||||||||||| | |||| ||| ||||||| | ||||||||||| |||||||||||||||||    
T  15177565 atgcatcttctgattagatctttgacttttt-taacctttcttcatatcatcttctaagtctt 15177504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 273
Target Start/End: Original strand, 15748384 - 15748499
Alignment:
Q  156 aatttaattatatggtcttgcacactcgaacatacattaaagtatccaattgttcttttatactttgttaacatcagaatcatatagacattgttctaaa 255  Q
    ||||||||| ||||||| |||| ||||||  || ||||| ||||  |||||||||||| |||| |||||| ||| | |||| || |||| ||||||||||    
T  15748384 aatttaattgtatggtcctgcatactcgag-at-cattagagtaggcaattgttctttcatacattgttatcataaaaatcttagagactttgttctaaa 15748481  T
Q  256 atccactttggtttaaca 273  Q
    || || ||||||| ||||    
T  15748482 attcaatttggttcaaca 15748499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 75
Target Start/End: Original strand, 20706977 - 20707046
Alignment:
Q  7 tgatgcatcttctgttcagatatttaactttttgtt-acctttcttcagatcatcttctaagtcttcaga 75  Q
    |||||||||||||| | | | |||||||||||| || |||| |||||| |||||| ||||||||||||||    
T  20706977 tgatgcatcttctgataaaaaatttaactttttattgacctatcttcatatcatcctctaagtcttcaga 20707046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 155 - 231
Target Start/End: Original strand, 18530387 - 18530463
Alignment:
Q  155 gaatttaattatatggtcttgcacactcgaacatacattaaagtatccaattgttcttttatactttgttaacatca 231  Q
    ||||||||||||||||||||||| ||| || || |||||| |||| | |||| || ||| |||| |||||| |||||    
T  18530387 gaatttaattatatggtcttgcatacttgatcacacattagagtaccaaattattttttaatacattgttatcatca 18530463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 43 - 225
Target Start/End: Original strand, 10677571 - 10677753
Alignment:
Q  43 acctttcttcagatcatcttctaagtcttcagagcttctcttgggtaccaaaatgctttcatttttctttagagcttgatgtttcaaaatcaatgagttg 142  Q
    ||||| ||| ||||||||||||| ||||||| ||||||||||| ||||||| |||||||  |||   || ||||||| |||||||| || |||| | |||    
T  10677571 accttactttagatcatcttctatgtcttcaaagcttctcttgagtaccaagatgctttactttgcgttcagagcttaatgtttcagaaccaataacttg 10677670  T
Q  143 actatgaattcggaatttaattatatggtcttgcacactcgaacatacattaaagtatccaattgttcttttatactttgtta 225  Q
    ||| || | ||  ||||||||||||||||| |||||| |  |||| || |||||||| ||||||||||||  |||| ||||||    
T  10677671 actttggagtcaaaatttaattatatggtcatgcacatttaaacacaccttaaagtacccaattgttcttgcataccttgtta 10677753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 29 - 150
Target Start/End: Complemental strand, 23135145 - 23135023
Alignment:
Q  29 tttaactttttgttac-ctttcttcagatcatcttctaagtcttcagagcttctcttgggtaccaaaatgctttcatttttctttagagcttgatgtttc 127  Q
    |||||||||||||||  ||||||| ||| ||| ||||||||||||||| ||||||||| |||||||||||||||| |||   ||||||| ||||| ||||    
T  23135145 tttaactttttgttaaactttctttagaacatgttctaagtcttcagaacttctcttgagtaccaaaatgctttcctttacgtttagagtttgatatttc 23135046  T
Q  128 aaaatcaatgagttgactatgaa 150  Q
    | ||||||| | |||||| ||||    
T  23135045 ataatcaataacttgactgtgaa 23135023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 114 - 265
Target Start/End: Original strand, 6414845 - 6414996
Alignment:
Q  114 gagcttgatgtttcaaaatcaatgagttgactatgaattcggaatttaattatatggtcttgcacactcgaacatacattaaagtatccaattgttcttt 213  Q
    |||||||||||||||||| |||| | || ||| |||| ||  ||||||||||||| ||| |||||||| |||   | |||| |||| |||||| ||||||    
T  6414845 gagcttgatgtttcaaaaccaataacttaactttgaagtcataatttaattatatcgtcctgcacacttgaatgcatattagagtacccaattattcttt 6414944  T
Q  214 tatactttgttaacatcagaatcatatagacattgttctaaaatccactttg 265  Q
     |||| |||||| ||| | ||   || ||||||||||||| || ||||||||    
T  6414945 catacattgttatcataaaaaatttaaagacattgttctataacccactttg 6414996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 155 - 256
Target Start/End: Original strand, 23655472 - 23655573
Alignment:
Q  155 gaatttaattatatggtcttgcacactcgaacatacattaaagtatccaattgttcttttatactttgttaacatcagaatcatatagacattgttctaa 254  Q
    |||||||||||||||||| | |||||  ||||| || ||| |||| |||||| ||||| ||||| | |||||||||| || | || ||||||| ||||||    
T  23655472 gaatttaattatatggtcctacacaccagaacaaactttagagtacccaatttttcttatatacatagttaacatcaaaaccttagagacattattctaa 23655571  T
Q  255 aa 256  Q
    ||    
T  23655572 aa 23655573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 164 - 259
Target Start/End: Original strand, 16427968 - 16428063
Alignment:
Q  164 tatatggtcttgcacactcgaacatacattaaagtatccaattgttcttttatactttgttaacatcagaatcatatagacattgttctaaaatcc 259  Q
    ||||||||  || ||||| ||||| || ||| |||| | ||||||| ||||||||||||||| ||||| || |||||| | |||||| ||||||||    
T  16427968 tatatggtactggacacttgaacaaactttagagtaccaaattgttattttatactttgttatcatcaaaaccatatatatattgttataaaatcc 16428063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 275
Target Start/End: Complemental strand, 7666356 - 7666239
Alignment:
Q  158 tttaattatatggtcttgcacactcgaacatacattaaagtatccaattgttcttttatactttgttaacatcagaatcatatagacattgttctaaaat 257  Q
    ||||||||||||||| | || ||| ||||| |  ||  |||| ||| |||||||| ||||| |||||| ||||| || | || ||| ||||||||||||     
T  7666356 tttaattatatggtcctacatacttgaacaaaattttgagtacccagttgttcttctatacattgttatcatcaaaaacttagagatattgttctaaaac 7666257  T
Q  258 ccactttggtttaacaac 275  Q
    |||  |||||||||||||    
T  7666256 ccatcttggtttaacaac 7666239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 225
Target Start/End: Complemental strand, 10646558 - 10646489
Alignment:
Q  156 aatttaattatatggtcttgcacactcgaacatacattaaagtatccaattgttcttttatactttgtta 225  Q
    ||||| ||||||||||| |||||||| |||||||  ||||  |||||||||||| ||  |||||||||||    
T  10646558 aattttattatatggtcctgcacacttgaacatatgttaacatatccaattgttattcaatactttgtta 10646489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 122
Target Start/End: Original strand, 19650613 - 19650670
Alignment:
Q  65 aagtcttcagagcttctcttgggtaccaaaatgctttcatttttctttagagcttgat 122  Q
    ||||||||| ||||||||||| ||||||||||| |||| ||| | || ||||||||||    
T  19650613 aagtcttcatagcttctcttgagtaccaaaatgttttcctttgtgttcagagcttgat 19650670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 149 - 253
Target Start/End: Complemental strand, 4122694 - 4122590
Alignment:
Q  149 aattcggaatttaattatatggtcttgcacactcgaacatacattaaagtatccaattgttcttttatactttgttaacatcagaatcatatagacattg 248  Q
    ||||| ||||||| |||||||| | |||||||| ||||| || |||  |||  ||||||||||||| ||| |||||| ||| | |||| || ||| ||||    
T  4122694 aattcagaatttagttatatggccctgcacactggaacacacgttattgtactcaattgttcttttctacattgttatcattaaaatcttagagatattg 4122595  T
Q  249 ttcta 253  Q
    |||||    
T  4122594 ttcta 4122590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 4e-20; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 156 - 274
Target Start/End: Complemental strand, 12285876 - 12285758
Alignment:
Q  156 aatttaattatatggtcttgcacactcgaacatacattaaagtatccaattgttcttttatactttgttaacatcagaatcatatagacattgttctaaa 255  Q
    |||| |||||||||||||||  |||| ||| | |||||| |||| |||||||||||||  ||| |||||| ||||| |||  ||||||||||||| ||||    
T  12285876 aattcaattatatggtcttgtgcacttgaaaacacattagagtacccaattgttctttcttacattgttatcatcaaaattttatagacattgttttaaa 12285777  T
Q  256 atccactttggtttaacaa 274  Q
    ||||||||||||| |||||    
T  12285776 atccactttggttcaacaa 12285758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 156 - 273
Target Start/End: Complemental strand, 24715762 - 24715645
Alignment:
Q  156 aatttaattatatggtcttgcacactcgaacatacattaaagtatccaattgttcttttatactttgttaacatcagaatcatatagacattgttctaaa 255  Q
    ||||||||| |||||||||||||| | ||||| |||||| |||| ||||||||||||| |||  |||||| ||||| |||| || |||||||| | ||||    
T  24715762 aatttaattgtatggtcttgcacaattgaacacacattagagtacccaattgttctttcataaattgttatcatcaaaatcttaaagacattgatgtaaa 24715663  T
Q  256 atccactttggtttaaca 273  Q
    | ||||||||||| ||||    
T  24715662 acccactttggttcaaca 24715645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 7 - 271
Target Start/End: Complemental strand, 35150376 - 35150100
Alignment:
Q  7 tgatgcatcttctgttcagatatttaactttttgtt-acctttcttcagatcatcttctaagtcttcaga----------gcttctcttgggtaccaaaa 95  Q
    |||||||||||||  |||||  ||||| |||||||| ||||||||||| |||||||||||||||||||||          || ||||||| ||||||||     
T  35150376 tgatgcatcttctaatcagaactttaattttttgttgacctttcttcatatcatcttctaagtcttcagaaatcttcttagcatctcttgagtaccaaag 35150277  T
Q  96 tgctttcatttttcttt-agagcttgatgtttcaaaatcaatgagttgactatgaattcggaatttaattatatggtcttgcacactcgaacatacatta 194  Q
    || |||  | || | || |||||||||||||||| || |||  | |||||| |||| || ||||||| || |||||| |||||| || ||||| ||| ||    
T  35150276 tgtttttttcttgcgttcagagcttgatgtttcagaaccaacaacttgactttgaagtcagaatttagttttatggtattgcacccttgaacacacacta 35150177  T
Q  195 aagtatccaattgttcttttatactttgttaacatcagaatcatatagacattgttctaaaatccactttggtttaa 271  Q
    |||||  |||||||| ||| |||| |||||| ||||| ||   || ||||||||||||||||  ||||||| |||||    
T  35150176 aagtactcaattgttatttcatacattgttatcatcaaaactttagagacattgttctaaaactcactttgctttaa 35150100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 167 - 274
Target Start/End: Original strand, 20748642 - 20748749
Alignment:
Q  167 atggtcttgcacactcgaacatacattaaagtatccaattgttcttttatactttgttaacatcagaatcatatagacattgttctaaaatccactttgg 266  Q
    |||||||||| |||| ||| | | ||||| ||||||||||||||||| |||| |||||| ||||  |  | ||||||||||||||||| | |||||||||    
T  20748642 atggtcttgcgcacttgaatacaaattaatgtatccaattgttctttcatacattgttatcatcgtatccttatagacattgttctaatacccactttgg 20748741  T
Q  267 tttaacaa 274  Q
    ||||||||    
T  20748742 tttaacaa 20748749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 155 - 225
Target Start/End: Original strand, 23692972 - 23693042
Alignment:
Q  155 gaatttaattatatggtcttgcacactcgaacatacattaaagtatccaattgttcttttatactttgtta 225  Q
    |||||||||||||||||||||| | || ||||| |||||| |||| ||||||||| ||| |||| ||||||    
T  23692972 gaatttaattatatggtcttgctcgcttgaacacacattagagtacccaattgttatttcatacattgtta 23693042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 7 - 75
Target Start/End: Original strand, 17743804 - 17743873
Alignment:
Q  7 tgatgcatcttctgttcagatatttaactttttgtt-acctttcttcagatcatcttctaagtcttcaga 75  Q
    |||| ||| ||||| |||||  ||| |||||||||| ||||||||||||||||||| |||||||||||||    
T  17743804 tgatacattttctgatcagagctttgactttttgttgacctttcttcagatcatctgctaagtcttcaga 17743873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 68
Target Start/End: Complemental strand, 16404253 - 16404213
Alignment:
Q  29 tttaactttttgtt-acctttcttcagatcatcttctaagt 68  Q
    |||||||||||||| ||||||||||||||||||||||||||    
T  16404253 tttaactttttgttgacctttcttcagatcatcttctaagt 16404213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 75
Target Start/End: Original strand, 20748472 - 20748541
Alignment:
Q  7 tgatgcatcttctgttcagatatttaactttttgtta-cctttcttcagatcatcttctaagtcttcaga 75  Q
    |||||||||||||  ||| |  ||||||||||| ||| ||||| ||||||||||||| ||||||||||||    
T  20748472 tgatgcatcttctaatcaaagctttaactttttattaaccttttttcagatcatcttttaagtcttcaga 20748541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 171 - 231
Target Start/End: Complemental strand, 8677294 - 8677234
Alignment:
Q  171 tcttgcacactcgaacatacattaaagtatccaattgttcttttatactttgttaacatca 231  Q
    ||||||||||| ||||||| |||||  ||| |||||||| ||| ||||||||||| |||||    
T  8677294 tcttgcacacttgaacatatattaacatattcaattgttttttaatactttgttatcatca 8677234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 140 - 274
Target Start/End: Complemental strand, 20817018 - 20816885
Alignment:
Q  140 ttgactatgaattcggaatttaattatatggtcttgcacactcgaacatacattaaagtatccaattgttcttttatactttgttaacatcagaatcata 239  Q
    |||||| ||||||| |||||||||| ||||||| ||||||||  |||| ||||||| |||| |||||||||||| |||| |||||| ||| | ||   ||    
T  20817018 ttgactttgaattcagaatttaattttatggtcctgcacacttcaacacacattaa-gtattcaattgttctttcatacattgttatcattaaaacatta 20816920  T
Q  240 tagacattgttctaaaatccactttggtttaacaa 274  Q
     |||||||||||||||| ||||||| ||| |||||    
T  20816919 gagacattgttctaaaacccactttagttcaacaa 20816885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 50 - 187
Target Start/End: Complemental strand, 12893089 - 12892953
Alignment:
Q  50 ttcagatcatcttctaagtcttcagagcttctcttgggtaccaaaatgctttcatttttctttagagcttgatgtttcaaaatcaatgagttgactatga 149  Q
    |||||||||||||||||||||||| | ||||| ||| |||||||||| ||||| ||| | |||  |||||||||| ||| || |||  |  ||||| |||    
T  12893089 ttcagatcatcttctaagtcttcataacttcttttgagtaccaaaatactttcctttgtgtttctagcttgatgtatcagaaccaa-aacatgactttga 12892991  T
Q  150 attcggaatttaattatatggtcttgcacactcgaaca 187  Q
    | ||  ||||||||||||||||| | |||||| |||||    
T  12892990 agtcaaaatttaattatatggtcctacacacttgaaca 12892953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 155 - 268
Target Start/End: Complemental strand, 36754987 - 36754874
Alignment:
Q  155 gaatttaattatatggtcttgcacactcgaacatacattaaagtatccaattgttcttttatactttgttaacatcagaatcatatagacattgttctaa 254  Q
    |||| ||||| |||| || |||||||| |||||  | ||| |||||||||||||||||| |||| |||||| ||||| ||   || ||| ||||||||||    
T  36754987 gaatataattttatgatcctgcacacttgaacacgcgttagagtatccaattgttctttcatacattgttatcatcaaaactttagagatattgttctaa 36754888  T
Q  255 aatccactttggtt 268  Q
    || |||||||||||    
T  36754887 aacccactttggtt 36754874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 7 - 71
Target Start/End: Complemental strand, 12900463 - 12900397
Alignment:
Q  7 tgatgcatcttctgttcagatatttaacttttt-gtt-acctttcttcagatcatcttctaagtctt 71  Q
    |||||||| || || |||||  ||||||||||| ||| |||||||||||||||||||||||||||||    
T  12900463 tgatgcatattatgatcagaactttaacttttttgttgacctttcttcagatcatcttctaagtctt 12900397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 225
Target Start/End: Complemental strand, 22669132 - 22669063
Alignment:
Q  156 aatttaattatatggtcttgcacactcgaacatacattaaagtatccaattgttcttttatactttgtta 225  Q
    ||||||||||||||||| |||||||| ||||| | |||| |||| | |||| |||||| |||| ||||||    
T  22669132 aatttaattatatggtcctgcacacttgaacaaatattagagtaccaaattcttctttcatacattgtta 22669063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 75
Target Start/End: Original strand, 34488414 - 34488483
Alignment:
Q  7 tgatgcatcttctgttcagatatttaactttttgtt-acctttcttcagatcatcttctaagtcttcaga 75  Q
    |||||||||||||| ||||| |||| |||||| ||| || ||||||||||| ||||||||  ||||||||    
T  34488414 tgatgcatcttctgatcagagatttgacttttcgttgacttttcttcagataatcttctagttcttcaga 34488483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 225
Target Start/End: Complemental strand, 40817091 - 40817022
Alignment:
Q  156 aatttaattatatggtcttgcacactcgaacatacattaaagtatccaattgttcttttatactttgtta 225  Q
    ||||||||||||| ||| | ||||||  ||  |||||||||||| | |||||||||||||||| ||||||    
T  40817091 aatttaattatatagtcatacacacttaaaagtacattaaagtaccaaattgttcttttatacattgtta 40817022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 158 - 206
Target Start/End: Complemental strand, 12889333 - 12889285
Alignment:
Q  158 tttaattatatggtcttgcacactcgaacatacattaaagtatccaatt 206  Q
    ||||||||||| |||||||||||| ||||| |||||| |||| ||||||    
T  12889333 tttaattatatagtcttgcacacttgaacacacattagagtacccaatt 12889285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 174 - 274
Target Start/End: Complemental strand, 17048152 - 17048052
Alignment:
Q  174 tgcacactcgaacatacattaaagtatccaattgttcttttatactttgttaacatcagaatcatatagacattgttctaaaatccactttggtttaaca 273  Q
    |||||||| ||||| |||||||| |||||||||||| ||| |||| || ||| || || || | || | | ||||||||||||  |||||||||| ||||    
T  17048152 tgcacacttgaacacacattaaaatatccaattgttatttcatacatttttatcaacaaaaccttagatatattgttctaaaactcactttggttcaaca 17048053  T
Q  274 a 274  Q
    |    
T  17048052 a 17048052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 46 - 271
Target Start/End: Complemental strand, 2120327 - 2120102
Alignment:
Q  46 tttcttcagatcatcttctaagtcttcagagcttctcttgggtaccaaaatgctttcatttttctttagagcttgatgtttcaaaatcaatgagttgact 145  Q
    ||||||| || || ||||||| |||||| | ||||||||| ||| |||||||||||| |||   ||   || ||||||||||| || |||||  ||||||    
T  2120327 tttcttcggaacaacttctaaatcttcacaacttctcttgagtatcaaaatgctttcttttgcgttctaagtttgatgtttcagaaacaatgctttgact 2120228  T
Q  146 atgaattcggaatttaattatatggtcttgcacactcgaacatacattaaagtatccaattgttcttttatactttgttaacatcagaatcatatagaca 245  Q
     |||  ||  ||||||||||||| ||||| |||||| | |||| ||||| ||||   |||| |||||| |||| |||||| ||| | |||| || |||||    
T  2120227 ttgatgtcataatttaattatattgtctttcacacttggacatccattagagtactaaattattctttcatacattgttatcataaaaatcttagagaca 2120128  T
Q  246 ttgttctaaaatccactttggtttaa 271  Q
    |||||| |||| ||| ||| ||||||    
T  2120127 ttgttcaaaaacccaatttagtttaa 2120102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 156 - 215
Target Start/End: Complemental strand, 4698695 - 4698636
Alignment:
Q  156 aatttaattatatggtcttgcacactcgaacatacattaaagtatccaattgttctttta 215  Q
    ||||||||| |||||| ||||||||| |||||||||||| ||||| ||||||||||||||    
T  4698695 aatttaattttatggttttgcacacttgaacatacattagagtattcaattgttctttta 4698636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 156 - 285
Target Start/End: Complemental strand, 23528457 - 23528329
Alignment:
Q  156 aatttaattatatggtcttgcacactcgaacatacattaaagtatccaattgttcttttatactttgttaacatcagaatcatatagacattgttctaaa 255  Q
    ||||||||| ||||||| |||||| | || || | |||| |||| ||||||||||||| | || |||||| ||||| || | || |||||||||||||||    
T  23528457 aatttaattttatggtcctgcacatt-gagcaaaaattatagtacccaattgttctttcagacattgttatcatcaaaaccttagagacattgttctaaa 23528359  T
Q  256 atccactttggtttaacaaccttttccttt 285  Q
    |  |||||||||| ||||| || |||||||    
T  23528358 actcactttggttcaacaatctcttccttt 23528329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 236
Target Start/End: Complemental strand, 14426971 - 14426903
Alignment:
Q  168 tggtcttgcacactcgaacatacattaaagtatccaattgttcttttatactttgttaacatcagaatc 236  Q
    ||||| |||||||| ||||||| ||||   |||||||||||||||| ||||||||||| ||||| ||||    
T  14426971 tggtcctgcacacttgaacatatattagcatatccaattgttctttaatactttgttatcatcaaaatc 14426903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 155 - 218
Target Start/End: Complemental strand, 4668227 - 4668164
Alignment:
Q  155 gaatttaattatatggtcttgcacactcgaacatacattaaagtatccaattgttcttttatac 218  Q
    |||||||||| |||||| ||||| | |  || |||||||||||||||||| |||||||||||||    
T  4668227 gaatttaattttatggttttgcatatttaaagatacattaaagtatccaactgttcttttatac 4668164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 156 - 231
Target Start/End: Complemental strand, 20311440 - 20311365
Alignment:
Q  156 aatttaattatatggtcttgcacactcgaacatacattaaagtatccaattgttcttttatactttgttaacatca 231  Q
    ||||| ||| ||||||| |||||||| ||||||| ||||   |||||||||||||||  ||||||||||| |||||    
T  20311440 aattttattttatggtcatgcacacttgaacatatattagcatatccaattgttcttaaatactttgttatcatca 20311365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 174 - 231
Target Start/End: Complemental strand, 5797988 - 5797930
Alignment:
Q  174 tgcacactcgaacatacattaaagtatccaattgttctttta-tactttgttaacatca 231  Q
    |||||||| |||||||||||||  |||||||||||||||||| ||| |||||| |||||    
T  5797988 tgcacacttgaacatacattaacatatccaattgttcttttagtaccttgttatcatca 5797930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 231
Target Start/End: Original strand, 9796548 - 9796605
Alignment:
Q  174 tgcacactcgaacatacattaaagtatccaattgttcttttatactttgttaacatca 231  Q
    |||||||| ||||||| |||||  |||||||||||||||| ||||||| ||| |||||    
T  9796548 tgcacacttgaacatatattaacatatccaattgttctttaatactttattatcatca 9796605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 156 - 212
Target Start/End: Original strand, 10686948 - 10687004
Alignment:
Q  156 aatttaattatatggtcttgcacactcgaacatacattaaagtatccaattgttctt 212  Q
    ||||||||||||||||| |||||||| ||||| |||| ||  |||||||| ||||||    
T  10686948 aatttaattatatggtcctgcacacttgaacacacatcaatatatccaatcgttctt 10687004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 155 - 231
Target Start/End: Original strand, 27686139 - 27686215
Alignment:
Q  155 gaatttaattatatggtcttgcacactcgaacatacattaaagtatccaattgttcttttatactttgttaacatca 231  Q
    |||||||||| ||||||| |||||||| ||||  |||||||  |||  |||||||| || |||| ||||||||||||    
T  27686139 gaatttaattctatggtcctgcacacttgaacgcacattaacatatttaattgttcgttcatacattgttaacatca 27686215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 156 - 274
Target Start/End: Complemental strand, 35511937 - 35511819
Alignment:
Q  156 aatttaattatatggtcttgcacactcgaacatacattaaagtatccaattgttcttttatactttgttaacatcagaatcatatagacattgttctaaa 255  Q
    |||||||| ||||||||||| | ||| |||||||||||| |||||| |||| ||||||||||| | |||| ||||| ||   || | |||||||||||||    
T  35511937 aatttaatcatatggtcttgtatacttgaacatacattagagtatcaaattattcttttatacatcgttatcatcaaaacattaaaaacattgttctaaa 35511838  T
Q  256 atccactttggtttaacaa 274  Q
    |  ||||||| || |||||    
T  35511837 actcactttgattcaacaa 35511819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 156 - 231
Target Start/End: Original strand, 18115064 - 18115139
Alignment:
Q  156 aatttaattatatggtcttgcacactcgaacatacattaaagtatccaattgttcttttatactttgttaacatca 231  Q
    ||||||||||||| ||| |||||||| || || |||||| |||| |||||| ||||||||||| |||||| |||||    
T  18115064 aatttaattatatagtcatgcacacttgagcacacattagagtacccaattattcttttatacgttgttatcatca 18115139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 155 - 273
Target Start/End: Original strand, 24386338 - 24386456
Alignment:
Q  155 gaatttaattatatggtcttgcacactcgaacatacattaaagtatccaattgttcttttatactttgttaacatcagaatcatatagacattgttctaa 254  Q
    |||||||||| ||||||| |||||||| ||||| |||||||| ||   ||||||||||| |||| || ||| ||| | || | ||  || ||||||||||    
T  24386338 gaatttaattctatggtcatgcacacttgaacacacattaaattactaaattgttctttcatacattattatcataaaaaccttagggatattgttctaa 24386437  T
Q  255 aatccactttggtttaaca 273  Q
    || ||||||||||| ||||    
T  24386438 aacccactttggttcaaca 24386456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 155 - 225
Target Start/End: Complemental strand, 27483898 - 27483828
Alignment:
Q  155 gaatttaattatatggtcttgcacactcgaacatacattaaagtatccaattgttcttttatactttgtta 225  Q
    |||||||||| ||||||| |||||||| ||||| |||||||  |||| ||||||||||| | |||||||||    
T  27483898 gaatttaattttatggtcctgcacacttgaacacacattaatatatcaaattgttctttcaaactttgtta 27483828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 155 - 221
Target Start/End: Original strand, 26712906 - 26712972
Alignment:
Q  155 gaatttaattatatggtcttgcacactcgaacatacattaaagtatccaattgttcttttatacttt 221  Q
    |||||||||||||||||| | |||||| ||||| | ||||   ||| ||||||||||||||||||||    
T  26712906 gaatttaattatatggtcatacacacttgaacacatattagcatattcaattgttcttttatacttt 26712972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 166 - 236
Target Start/End: Complemental strand, 27765384 - 27765314
Alignment:
Q  166 tatggtcttgcacactcgaacatacattaaagtatccaattgttcttttatactttgttaacatcagaatc 236  Q
    ||||||| |||||| | ||||||| |||||  ||||||||| |||||| ||||||||||| ||||| ||||    
T  27765384 tatggtcctgcacatttgaacatatattaacatatccaattattctttaatactttgttatcatcaaaatc 27765314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 62 - 94
Target Start/End: Complemental strand, 16748259 - 16748227
Alignment:
Q  62 tctaagtcttcagagcttctcttgggtaccaaa 94  Q
    |||||||||||||||||||||||| ||||||||    
T  16748259 tctaagtcttcagagcttctcttgagtaccaaa 16748227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 155 - 231
Target Start/End: Complemental strand, 21538545 - 21538469
Alignment:
Q  155 gaatttaattatatggtcttgcacactcgaacatacattaaagtatccaattgttcttttatactttgttaacatca 231  Q
    |||||||||||||||||||| | || | ||||| ||| || |||| | ||||||||||| |||| |||||| |||||    
T  21538545 gaatttaattatatggtctttcccaattgaacacacaatagagtaccaaattgttctttcatacattgttatcatca 21538469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 43 - 84
Target Start/End: Original strand, 19990723 - 19990764
Alignment:
Q  43 acctttcttcagatcatcttctaagtcttcagagcttctctt 84  Q
    |||||||||| ||||||||||||||||||||||| |||||||    
T  19990723 acctttcttctgatcatcttctaagtcttcagagtttctctt 19990764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 158 - 268
Target Start/End: Complemental strand, 11848373 - 11848263
Alignment:
Q  158 tttaattatatggtcttgcacactcgaacatacattaaagtatccaattgttcttttatactttgttaacatcagaatcatatagacattgttctaaaat 257  Q
    ||||||||| ||||| | | |||| ||||| |||||| | || | ||||||||||| ||||  ||||| ||||| || | || |||||||||| |||||     
T  11848373 tttaattatttggtcattcgcacttgaacacacattataataccaaattgttctttcatacaatgttatcatcaaaaccttagagacattgttgtaaaac 11848274  T
Q  258 ccactttggtt 268  Q
    |||||||||||    
T  11848273 ccactttggtt 11848263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 156 - 218
Target Start/End: Complemental strand, 16687192 - 16687130
Alignment:
Q  156 aatttaattatatggtcttgcacactcgaacatacattaaagtatccaattgttcttttatac 218  Q
    ||||||||| ||||||||||||||||  |||| |||||| |||| |||||| |||||| ||||    
T  16687192 aatttaattctatggtcttgcacacttaaacacacattagagtacccaattattctttcatac 16687130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 274
Target Start/End: Complemental strand, 24559019 - 24558950
Alignment:
Q  205 ttgttcttttatactttgttaacatcagaatcatatagacattgttctaaaatccactttggtttaacaa 274  Q
    ||||||||| |||| || ||| ||||| || | || |||||||||||||||| ||||||||||| |||||    
T  24559019 ttgttctttcatacattattatcatcaaaaccttaaagacattgttctaaaacccactttggttaaacaa 24558950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 274
Target Start/End: Complemental strand, 24600051 - 24599982
Alignment:
Q  205 ttgttcttttatactttgttaacatcagaatcatatagacattgttctaaaatccactttggtttaacaa 274  Q
    ||||||||| |||| || ||| ||||| || | || |||||||||||||||| ||||||||||| |||||    
T  24600051 ttgttctttcatacattattatcatcaaaaccttaaagacattgttctaaaacccactttggttaaacaa 24599982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 164 - 259
Target Start/End: Original strand, 16681 - 16776
Alignment:
Q  164 tatatggtcttgcacactcgaacatacattaaagtatccaattgttcttttatactttgttaacatcagaatcatatagacattgttctaaaatcc 259  Q
    ||||||||  || ||||| ||||| || ||| |||| | ||||||| ||||||||||||||| ||||| || |||||| | |||||| ||||||||    
T  16681 tatatggtactggacacttgaacaaactttagagtaccaaattgttattttatactttgttatcatcaaaaccatatatatattgttataaaatcc 16776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 164 - 259
Target Start/End: Original strand, 30827 - 30922
Alignment:
Q  164 tatatggtcttgcacactcgaacatacattaaagtatccaattgttcttttatactttgttaacatcagaatcatatagacattgttctaaaatcc 259  Q
    ||||||||  || ||||| ||||| || ||| |||| | ||||||| ||||||||||||||| ||||| || |||||| | |||||| ||||||||    
T  30827 tatatggtactggacacttgaacaaactttagagtaccaaattgttattttatactttgttatcatcaaaaccatatatatattgttataaaatcc 30922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 231
Target Start/End: Complemental strand, 30701157 - 30701124
Alignment:
Q  198 tatccaattgttcttttatactttgttaacatca 231  Q
    |||||||||||||||||||||||||||| |||||    
T  30701157 tatccaattgttcttttatactttgttatcatca 30701124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 156 - 264
Target Start/End: Complemental strand, 13002187 - 13002079
Alignment:
Q  156 aatttaattatatggtcttgcacactcgaacatacattaaagtatccaattgttcttttatactttgttaacatcagaatcatatagacattgttctaaa 255  Q
    ||||||||||||||||  ||||||||  |||| | | ||||||| |||||| | |||  |||| ||  || ||||| | | ||| |||||||||||||||    
T  13002187 aatttaattatatggtgctgcacacttaaacaaaaactaaagtacccaattttccttacatacattactatcatcaaagttatagagacattgttctaaa 13002088  T
Q  256 atccacttt 264  Q
    |||||||||    
T  13002087 atccacttt 13002079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 156 - 268
Target Start/End: Original strand, 14761267 - 14761378
Alignment:
Q  156 aatttaattatatggtcttgcacactcgaacatacattaaagtatccaattgttcttttatactttgttaacatcagaatcatatagacattgttctaaa 255  Q
    ||||||| || || |||||||||||| ||||| || ||| |||| | ||||| | ||| |||| |||||| ||||| |||  || |||||||||||||||    
T  14761267 aatttaaatacatagtcttgcacacttgaacacacgttatagtaccaaattgct-tttcatacattgttatcatcaaaattttagagacattgttctaaa 14761365  T
Q  256 atccactttggtt 268  Q
    | ||||| |||||    
T  14761366 acccactatggtt 14761378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 158 - 231
Target Start/End: Complemental strand, 19255424 - 19255349
Alignment:
Q  158 tttaattatatggtcttgcacactcgaacatacattaaagtat--ccaattgttcttttatactttgttaacatca 231  Q
    ||||||||| ||||| | |||||| ||||| |||||||| |||  | || |||||||||||||||||||| |||||    
T  19255424 tttaattatttggtcgttcacacttgaacacacattaaaatatatcaaactgttcttttatactttgttagcatca 19255349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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