View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11386A_low_410 (Length: 236)
Name: NF11386A_low_410
Description: NF11386A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11386A_low_410 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 5 - 231
Target Start/End: Complemental strand, 52242604 - 52242378
Alignment:
| Q |
5 |
tttaatgatgtgtttgggtgaccgacgcggaggaggtcagcgggtagtggaggagaggaaggtgaaacgggttggtgtagttggcctcctccgcctgaga |
104 |
Q |
| |
|
|||||||||||||||||| |||| |||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52242604 |
tttaatgatgtgtttgggggaccaccgcggaggaggtcatcggtgagtggaggagaggaaggtgaaacgggttggtgtagttggcctcctccgcctgaga |
52242505 |
T |
|
| Q |
105 |
gcgagaaaccggtgtttggtgaggatagtggagttaggaggagaagaaaaggaaaagatttctttgatgatatatttggaggagaagattcacagtctca |
204 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52242504 |
gcgagaaaccagtgtttggtgaggatagtggagctaggaggagaagaaaaggaaaagatttttttgatgatatatttggaggagaagattcacagtctca |
52242405 |
T |
|
| Q |
205 |
aactccaagtgggtgttcaacaccaaa |
231 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
52242404 |
aactccaagtgggtgttcaacaccaaa |
52242378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University