View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11386A_low_411 (Length: 235)
Name: NF11386A_low_411
Description: NF11386A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11386A_low_411 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 13 - 235
Target Start/End: Original strand, 40768448 - 40768670
Alignment:
| Q |
13 |
tgaaagctgattttctgcactctgatactttagttgctttattccttttccaagccacaatatgcgatcacacctgcataatcttacgcataattatagt |
112 |
Q |
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| T |
40768448 |
tgaaagctgattttctgcactctgatactttagttgctttattccttttccaagccacaatatgcgatcacacctgcataatcttacgcataattatagt |
40768547 |
T |
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| Q |
113 |
gtctaattcatgcaacaacaaaaaattcacatgcttgcacttaccatgctggagctctccttttttcaccttcttgtgtgttcccacccacatgtttatc |
212 |
Q |
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| T |
40768548 |
gtctaattcatgcaacaacaaaaaattcacatgcttgcacttaccatgctggagctctccttttttcaccttcttgtgtgttcccacccacatgtttatc |
40768647 |
T |
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| Q |
213 |
agagttaaattcatatttgtatg |
235 |
Q |
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||||||||||||||||||||||| |
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| T |
40768648 |
agagttaaattcatatttgtatg |
40768670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 13 - 233
Target Start/End: Original strand, 40775080 - 40775300
Alignment:
| Q |
13 |
tgaaagctgattttctgcactctgatactttagttgctttattccttttccaagccacaatatgcgatcacacctgcataatcttacgcataattatagt |
112 |
Q |
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||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40775080 |
tgaaagctgattttctgcactttgatacttaagttgctttattccttttccaagccacaatatgcgatcacacctgcataatcttacgcataattatagt |
40775179 |
T |
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| Q |
113 |
gtctaattcatgcaacaacaaaaaattcacatgcttgcacttaccatgctggagctctccttttttcaccttcttgtgtgttcccacccacatgtttatc |
212 |
Q |
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| T |
40775180 |
gtctaattcatgcaataacaaaacattcacatgcttgcacttaccatgctggagatctctttttttccccttcttgtgtgtcctcacccacatatttatc |
40775279 |
T |
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| Q |
213 |
agagttaaattcatatttgta |
233 |
Q |
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| T |
40775280 |
tgagttaacttcatacttgta |
40775300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 24 - 91
Target Start/End: Complemental strand, 4679965 - 4679898
Alignment:
| Q |
24 |
tttctgcactctgatactttagttgctttattccttttccaagccacaatatgcgatcacacctgcat |
91 |
Q |
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||||||||| | ||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||| |
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| T |
4679965 |
tttctgcacgttcataatttagttgctttattccttttcctagccacaatattcgatcacacctgcat |
4679898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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