View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11386A_low_416 (Length: 235)
Name: NF11386A_low_416
Description: NF11386A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11386A_low_416 |
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Alignment Details
Target: chr1 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 26 - 156
Target Start/End: Original strand, 3429304 - 3429434
Alignment:
| Q |
26 |
cttggttgctccttgagagtttacaaaaagagcatgctagtgccaacaacgccaaggctatgagtcccataatggctgctagtcctccaaagagatatgg |
125 |
Q |
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| T |
3429304 |
cttggttgttccttgagagtttacaaaaagagcatgctagtgccaacaacgccaaggctatgagtcccataatggctgctagtcctccaaagagatatgg |
3429403 |
T |
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| Q |
126 |
gattggagtgtgccataaggagggagtaata |
156 |
Q |
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| T |
3429404 |
gattggagtgtgccataaggagggagtaata |
3429434 |
T |
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Target: chr1; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 26 - 156
Target Start/End: Original strand, 3425825 - 3425955
Alignment:
| Q |
26 |
cttggttgctccttgagagtttacaaaaagagcatgctagtgccaacaacgccaaggctatgagtcccataatggctgctagtcctccaaagagatatgg |
125 |
Q |
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|||||||| |||||||||| ||||| | |||||||||||| |||| ||||||||||||||||| || ||||| || ||||||||||||||||||||||| |
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| T |
3425825 |
cttggttgtcccttgagagtctacaatatgagcatgctagtaccaataacgccaaggctatgagacctataatagcagctagtcctccaaagagatatgg |
3425924 |
T |
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| Q |
126 |
gattggagtgtgccataaggagggagtaata |
156 |
Q |
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| T |
3425925 |
cattggagtgtgccataaggagtgaggaata |
3425955 |
T |
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