View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11386A_low_418 (Length: 234)

Name: NF11386A_low_418
Description: NF11386A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11386A_low_418
NF11386A_low_418
[»] chr3 (11 HSPs)
chr3 (25-214)||(5854188-5854377)
chr3 (25-180)||(5502927-5503082)
chr3 (30-185)||(5490109-5490264)
chr3 (25-188)||(20343549-20343712)
chr3 (25-185)||(5454932-5455092)
chr3 (38-185)||(5446373-5446520)
chr3 (25-187)||(5525757-5525919)
chr3 (25-188)||(5484712-5484875)
chr3 (25-182)||(5848887-5849045)
chr3 (25-173)||(5828158-5828306)
chr3 (30-142)||(5802495-5802607)
[»] chr6 (1 HSPs)
chr6 (38-185)||(25809292-25809439)


Alignment Details
Target: chr3 (Bit Score: 174; Significance: 9e-94; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 25 - 214
Target Start/End: Original strand, 5854188 - 5854377
Alignment:
Q  25 cagatatggtggaagtggctgcttactttggtttgacaacattgttgacatgagaaaacatccagaccaaggacaagacattttcatacggctggcatct 124  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5854188 cagatatgttggaagtggctgcttactttggtttgacaacattgttgatatgagaaaacatccagaccaaggacaagacattttcatacggctggcatct 5854287  T
Q  125 tcagaacttggtattttcatttcctattacatcttttgccttttcagtttgatatatagcacaacaaatagaagttgcggaagttgtgtt 214  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  5854288 tcagaacttggtatttacatttcctattacatcttttgccttttcagtctgatatatagcacaacaaatagaagttgcggaagttgtgtt 5854377  T

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Target: chr3; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 25 - 180
Target Start/End: Complemental strand, 5503082 - 5502927
Alignment:
Q  25 cagatatggtggaagtggctgcttactttggtttgacaacattgttgacatgagaaaacatccagaccaaggacaagacattttcatacggctggcatct 124  Q
    |||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  5503082 cagagatggtgggagtggctgcttactttggtttgacaacattgtcgacatgagaaaacatccagaccaaggacaagacatttacatacggctggcatct 5502983  T
Q  125 tcagaacttggtattttcatttcctattacatcttttgccttttcagtttgatata 180  Q
    ||||| |||||||||||||||| ||||||||| ||||| | |||||||| ||||||    
T  5502982 tcagagcttggtattttcatttgctattacatattttgtcctttcagttagatata 5502927  T

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Target: chr3; HSP #3
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 30 - 185
Target Start/End: Complemental strand, 5490264 - 5490109
Alignment:
Q  30 atggtggaagtggctgcttactttggtttgacaacattgttgacatgagaaaacatccagaccaaggacaagacattttcatacggctggcatcttcaga 129  Q
    ||||||| ||||||||| ||||||||||| |||||||||| |||||||||||||||| |||||||||||||||||||| ||||||| |||||||||||||    
T  5490264 atggtgggagtggctgcatactttggtttaacaacattgtggacatgagaaaacatcaagaccaaggacaagacatttacatacggatggcatcttcaga 5490165  T
Q  130 acttggtattttcatttcctattacatcttttgccttttcagtttgatatatagca 185  Q
    |||||||||||||||||| |||||||| ||||| |||||||||| |||||||||||    
T  5490164 acttggtattttcatttcttattacatattttgtcttttcagttagatatatagca 5490109  T

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Target: chr3; HSP #4
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 25 - 188
Target Start/End: Complemental strand, 20343712 - 20343549
Alignment:
Q  25 cagatatggtggaagtggctgcttactttggtttgacaacattgttgacatgagaaaacatccagaccaaggacaagacattttcatacggctggcatct 124  Q
    |||| ||||||| ||||| |||||||||||||||||||| ||| | |||||||||||||||| ||||||||||||||||||||  |||||||| ||||||    
T  20343712 cagagatggtgggagtggttgcttactttggtttgacaatattttggacatgagaaaacatcgagaccaaggacaagacatttatatacggctagcatct 20343613  T
Q  125 tcagaacttggtattttcatttcctattacatcttttgccttttcagtttgatatatagcacaa 188  Q
    ||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||| ||||||    
T  20343612 tcagaacttggtattttcatttcctattacatctttttcctttccagttagatatattgcacaa 20343549  T

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Target: chr3; HSP #5
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 25 - 185
Target Start/End: Complemental strand, 5455092 - 5454932
Alignment:
Q  25 cagatatggtggaagtggctgcttactttggtttgacaacattgttgacatgagaaaacatccagaccaaggacaagacattttcatacggctggcatct 124  Q
    |||| ||| ||| ||||||||| ||||||||||| |||||||||| |||||||||||||||| |||||||||||||||||||| ||||||| ||||||||    
T  5455092 cagagatgatgggagtggctgcatactttggtttcacaacattgtggacatgagaaaacatcaagaccaaggacaagacatttacatacggatggcatct 5454993  T
Q  125 tcagaacttggtattttcatttcctattacatcttttgccttttcagtttgatatatagca 185  Q
    |||||||||||||||||| |||| |||||||| ||||| |||||||||| |||||||||||    
T  5454992 tcagaacttggtattttcttttcttattacatattttgtcttttcagttagatatatagca 5454932  T

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Target: chr3; HSP #6
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 38 - 185
Target Start/End: Complemental strand, 5446520 - 5446373
Alignment:
Q  38 agtggctgcttactttggtttgacaacattgttgacatgagaaaacatccagaccaaggacaagacattttcatacggctggcatcttcagaacttggta 137  Q
    |||||||||||||| ||||||||| |||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||    
T  5446520 agtggctgcttactctggtttgacgacattgttgacatgagaatacatcaagaccaaggacaagacatttacatacggctggcatcttcagaacttggta 5446421  T
Q  138 ttttcatttcctattacatcttttgccttttcagtttgatatatagca 185  Q
    |||||||||  |||||||| ||||| | |||||||| |||||||||||    
T  5446420 ttttcatttgttattacatattttgtcctttcagttagatatatagca 5446373  T

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Target: chr3; HSP #7
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 25 - 187
Target Start/End: Complemental strand, 5525919 - 5525757
Alignment:
Q  25 cagatatggtggaagtggctgcttactttggtttgacaacattgttgacatgagaaaacatccagaccaaggacaagacattttcatacggctggcatct 124  Q
    |||| ||||||| ||||||||||||||||||||| |||||||||| ||||||||||||||||| |||  |||||||||||||| ||||||  ||||||||    
T  5525919 cagagatggtgggagtggctgcttactttggtttaacaacattgtggacatgagaaaacatcctgacgtaggacaagacatttacatacgattggcatct 5525820  T
Q  125 tcagaacttggtattttcatttcctattacatcttttgccttttcagtttgatatatagcaca 187  Q
    ||||||||||||||||| | ||||||| |||| |||| ||||||||||| |||||||||||||    
T  5525819 tcagaacttggtattttaacttcctatcacatatttttccttttcagttagatatatagcaca 5525757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 25 - 188
Target Start/End: Complemental strand, 5484875 - 5484712
Alignment:
Q  25 cagatatggtggaagtggctgcttactttggtttgacaacattgttgacatgagaaaacatccagaccaaggacaagacattttcatacggctggcatct 124  Q
    |||| ||||||| |||||||||||||||||||||| ||||||||| ||||||||||||||||| |||  ||||||||| |||| ||||||||||||||||    
T  5484875 cagagatggtgggagtggctgcttactttggtttggcaacattgtggacatgagaaaacatcctgacgtaggacaagaaatttacatacggctggcatct 5484776  T
Q  125 tcagaacttggtattttcatttcctattacatcttttgccttttcagtttgatatatagcacaa 188  Q
    |||||||||||||||||||||||| |  |||| ||||  || ||||||  ||||||||||||||    
T  5484775 tcagaacttggtattttcatttccaaagacatattttatctcttcagtcagatatatagcacaa 5484712  T

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Target: chr3; HSP #9
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 25 - 182
Target Start/End: Original strand, 5848887 - 5849045
Alignment:
Q  25 cagatatggtggaagtggctgcttactttggtttgacaacattgttgacatgagaaaacatccagaccaaggacaagacattttcatacggctggcatct 124  Q
    |||| ||||||| ||||||||||||||||||||| |||||||||| ||||||||||||||||| |||  |||||||||||||| |||||| || ||||||    
T  5848887 cagagatggtgggagtggctgcttactttggtttaacaacattgtggacatgagaaaacatcctgacataggacaagacatttacatacgactcgcatct 5848986  T
Q  125 tcagaacttggta-ttttcatttcctattacatcttttgccttttcagtttgatatata 182  Q
    |||||||| |||| ||||  | ||||||||||||||||||||| |||||  ||||||||    
T  5848987 tcagaactcggtattttttgtatcctattacatcttttgccttgtcagtgagatatata 5849045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 25 - 173
Target Start/End: Original strand, 5828158 - 5828306
Alignment:
Q  25 cagatatggtggaagtggctgcttactttggtttgacaacattgttgacatgagaaaacatccagaccaaggacaagacattttcatacggctggcatct 124  Q
    |||| ||||||| ||||||||||||||||||||| |||| ||||| ||||||||||||||||| |||  |||||||||||||| |||||| || ||||||    
T  5828158 cagagatggtgggagtggctgcttactttggtttaacaatattgtggacatgagaaaacatcctgacgtaggacaagacatttacatacgactcgcatct 5828257  T
Q  125 tcagaacttggtattttcatttcctattacatcttttgccttttcagtt 173  Q
    || ||||||||||||||||||||| |  |||| |||| ||| |||||||    
T  5828258 tccgaacttggtattttcatttccaaagacatattttacctcttcagtt 5828306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 30 - 142
Target Start/End: Original strand, 5802495 - 5802607
Alignment:
Q  30 atggtggaagtggctgcttactttggtttgacaacattgttgacatgagaaaacatccagaccaaggacaagacattttcatacggctggcatcttcaga 129  Q
    ||||||| ||||||||||||||||||||| |||| ||| | |||||||||||||||||||||  |||||||||||||| |||||| || |||||||||||    
T  5802495 atggtggtagtggctgcttactttggtttaacaatattatggacatgagaaaacatccagacgtaggacaagacatttacatacgactcgcatcttcaga 5802594  T
Q  130 acttggtattttc 142  Q
    |||||||||||||    
T  5802595 acttggtattttc 5802607  T

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Target: chr6 (Bit Score: 104; Significance: 5e-52; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 38 - 185
Target Start/End: Original strand, 25809292 - 25809439
Alignment:
Q  38 agtggctgcttactttggtttgacaacattgttgacatgagaaaacatccagaccaaggacaagacattttcatacggctggcatcttcagaacttggta 137  Q
    |||||||||||||| ||||||||| |||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||    
T  25809292 agtggctgcttactctggtttgacgacattgttgacatgagaatacatcaagaccaaggacaagacatttacatacggctggcatcttcagaacttggta 25809391  T
Q  138 ttttcatttcctattacatcttttgccttttcagtttgatatatagca 185  Q
    |||||||||  |||||||| ||||| | |||||||| |||||||||||    
T  25809392 ttttcatttgttattacatattttgtcctttcagttagatatatagca 25809439  T

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