View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11386A_low_428 (Length: 231)

Name: NF11386A_low_428
Description: NF11386A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11386A_low_428
NF11386A_low_428
[»] scaffold0003 (1 HSPs)
scaffold0003 (6-231)||(8966-9188)
[»] chr7 (1 HSPs)
chr7 (6-231)||(16420254-16420476)
[»] chr8 (1 HSPs)
chr8 (6-229)||(5538291-5538515)
[»] chr3 (1 HSPs)
chr3 (43-196)||(19932297-19932449)
[»] chr1 (5 HSPs)
chr1 (43-196)||(18901509-18901668)
chr1 (142-196)||(51784718-51784772)
chr1 (13-55)||(18901445-18901487)
chr1 (43-81)||(51784794-51784832)
chr1 (13-46)||(51784859-51784892)
[»] chr5 (2 HSPs)
chr5 (57-196)||(37940374-37940512)
chr5 (13-55)||(37940550-37940592)


Alignment Details
Target: scaffold0003 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 6 - 231
Target Start/End: Original strand, 8966 - 9188
Alignment:
Q  6 gtcgaagaatatgtgccactagatattactagctagaatttattagagtaatatataatcagattagcaagaaagtaggaaaacaaaaggaagcatagag 105  Q
    |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||  || ||||||||||||||||||||||||||||||||||||||||    
T  8966 gtcgaaaaatatgtgccactagatattactagctagtatttattagagtaatata--ataagattagcaagaaagtaggaaaacaaaaggaagcatagag 9063  T
Q  106 caaaggaagtgattgacctgtggaaataaacatcccacgtttcttcccaatcccattttccactatgtcccatattgttaggaaataagttcgtgggaga 205  Q
    ||||||||||||||| | |||||||||||| |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  9064 caaaggaagtgattggcgtgtggaaataaagatcc-acgtttcttcccaatcccattttccactatgttccatattgttaggaaataagttagtgggaga 9162  T
Q  206 attattagtaaccggttcctattctt 231  Q
    ||||||||||||||||||||||||||    
T  9163 attattagtaaccggttcctattctt 9188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 6 - 231
Target Start/End: Original strand, 16420254 - 16420476
Alignment:
Q  6 gtcgaagaatatgtgccactagatattactagctagaatttattagagtaatatataatcagattagcaagaaagtaggaaaacaaaaggaagcatagag 105  Q
    |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||  || ||||||||||||||||||||||||||||||||||||||||    
T  16420254 gtcgaaaaatatgtgccactagatattactagctagtatttattagagtaatata--ataagattagcaagaaagtaggaaaacaaaaggaagcatagag 16420351  T
Q  106 caaaggaagtgattgacctgtggaaataaacatcccacgtttcttcccaatcccattttccactatgtcccatattgttaggaaataagttcgtgggaga 205  Q
    ||||||||||||||| | |||||||||||| |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  16420352 caaaggaagtgattggcgtgtggaaataaagatcc-acgtttcttcccaatcccattttccactatgttccatattgttaggaaataagttagtgggaga 16420450  T
Q  206 attattagtaaccggttcctattctt 231  Q
    ||||||||||||||||||||||||||    
T  16420451 attattagtaaccggttcctattctt 16420476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 6 - 229
Target Start/End: Complemental strand, 5538515 - 5538291
Alignment:
Q  6 gtcgaagaatatgtgccactagatattactagctagaatttattagagtaatatata--atcagattagcaagaaagtaggaaaacaaaaggaagcatag 103  Q
    |||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||  || ||||||||||||||||||||||||||||||||||||||    
T  5538515 gtcgaaaaatatgtgccattagatattactagctagtatttattagagtaatatatataataagattagcaagaaagtaggaaaacaaaaggaagcatag 5538416  T
Q  104 agcaaa-ggaagtgattgacctgtggaaataaacatcccacgtttcttcccaatcccattttccactatgtcccatattgttaggaaataagttcgtggg 202  Q
    |||||| ||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||    
T  5538415 agcaaaaggaagtgattg-cgtgtggaaataaacatcc-acgtttcttcccaatcccattttccactatgtcccatattgttaggaaataagctagtggg 5538318  T
Q  203 agaattattagtaaccggttcctattc 229  Q
    |||||||||||||||| ||||||||||    
T  5538317 agaattattagtaaccagttcctattc 5538291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 106; Significance: 3e-53; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 43 - 196
Target Start/End: Original strand, 19932297 - 19932449
Alignment:
Q  43 atttattagagtaatatataatcagattagcaagaaagtaggaaaacaaaaggaagcatagagcaaaggaagtgattgacctgtggaaataaacatccca 142  Q
    |||||||| ||||||||||||| |||||||||| ||||||||||| ||||||||||||||||| ||||||| ||||||||  |||||||||||||| |||    
T  19932297 atttattaaagtaatatataataagattagcaataaagtaggaaagcaaaaggaagcatagagaaaaggaactgattgactagtggaaataaacat-cca 19932395  T
Q  143 cgtttcttcccaatcccattttccactatgtcccatattgttaggaaataagtt 196  Q
    ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  19932396 cgtttcttcccaatcccattttccactatgttccatatttttaggaaataagtt 19932449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 97; Significance: 8e-48; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 43 - 196
Target Start/End: Original strand, 18901509 - 18901668
Alignment:
Q  43 atttattagagtaatatataatcagattagcaagaaagtaggaaaacaaaaggaagcatagagcaaaggaagtgattgacctgtggaaataaacat---- 138  Q
    |||||||| ||||||||||||| |||||||||||||||||||||| ||||||||||||||||| ||||||| ||||||||  ||||||||||||||        
T  18901509 atttattaaagtaatatataataagattagcaagaaagtaggaaagcaaaaggaagcatagagaaaaggaactgattgactggtggaaataaacattaaa 18901608  T
Q  139 --cccacgtttcttcccaatcccattttccactatgtcccatattgttaggaaataagtt 196  Q
       |||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  18901609 catccacgtttcttcccaatcccattttccactatgttccatatttttaggaaataagtt 18901668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 142 - 196
Target Start/End: Complemental strand, 51784772 - 51784718
Alignment:
Q  142 acgtttcttcccaatcccattttccactatgtcccatattgttaggaaataagtt 196  Q
    |||||||||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  51784772 acgtttcttcccaatcccattttccactatgttccatatttttaggaaataagtt 51784718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 13 - 55
Target Start/End: Original strand, 18901445 - 18901487
Alignment:
Q  13 aatatgtgccactagatattactagctagaatttattagagta 55  Q
    |||||||| |||||||||||||||||||| |||||||||||||    
T  18901445 aatatgtgacactagatattactagctagtatttattagagta 18901487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 81
Target Start/End: Complemental strand, 51784832 - 51784794
Alignment:
Q  43 atttattagagtaatatataatcagattagcaagaaagt 81  Q
    |||||||| ||||||||||||| ||||||||||||||||    
T  51784832 atttattaaagtaatatataataagattagcaagaaagt 51784794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 46
Target Start/End: Complemental strand, 51784892 - 51784859
Alignment:
Q  13 aatatgtgccactagatattactagctagaattt 46  Q
    ||||||||||||||||||||||||||||| ||||    
T  51784892 aatatgtgccactagatattactagctagtattt 51784859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 57 - 196
Target Start/End: Complemental strand, 37940512 - 37940374
Alignment:
Q  57 tatataatcagattagcaagaaagtaggaaaacaaaaggaagcatagagcaaaggaagtgattgacctgtggaaataaacatcccacgtttcttcccaat 156  Q
    |||||||| ||||||||||||||||||| || ||||| |||||||||   ||||||| ||||| ||  |||||||||||||||| |||||||||||||||    
T  37940512 tatataataagattagcaagaaagtaggtaagcaaaaagaagcataggaaaaaggaactgattaactagtggaaataaacatcc-acgtttcttcccaat 37940414  T
Q  157 cccattttccactatgtcccatattgttaggaaataagtt 196  Q
    | ||||||||||||||| ||||||| ||||||||||||||    
T  37940413 ctcattttccactatgttccatatttttaggaaataagtt 37940374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 13 - 55
Target Start/End: Complemental strand, 37940592 - 37940550
Alignment:
Q  13 aatatgtgccactagatattactagctagaatttattagagta 55  Q
    ||||||||||||||||||||||||||||| |||||||||||||    
T  37940592 aatatgtgccactagatattactagctagtatttattagagta 37940550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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