View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11386A_low_430 (Length: 231)

Name: NF11386A_low_430
Description: NF11386A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11386A_low_430
NF11386A_low_430
[»] chr2 (4 HSPs)
chr2 (6-62)||(26062451-26062507)
chr2 (6-62)||(26068190-26068246)
chr2 (63-112)||(26062546-26062595)
chr2 (63-112)||(26068285-26068334)
[»] chr7 (1 HSPs)
chr7 (25-59)||(37379115-37379149)
[»] chr8 (1 HSPs)
chr8 (23-59)||(13574957-13574993)


Alignment Details
Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 6 - 62
Target Start/End: Original strand, 26062451 - 26062507
Alignment:
Q  6 atacacatgagttgacttaaaaagtggtgattgaaaattttacaaaaactaaaattc 62  Q
    |||||||||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  26062451 atacacatgagttgacttaaaaagtggtgattgaaaattttacaaggactaaaattc 26062507  T

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Target: chr2; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 6 - 62
Target Start/End: Original strand, 26068190 - 26068246
Alignment:
Q  6 atacacatgagttgacttaaaaagtggtgattgaaaattttacaaaaactaaaattc 62  Q
    |||||||||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  26068190 atacacatgagttgacttaaaaagtggtgattgaaaattttacaaggactaaaattc 26068246  T

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Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 63 - 112
Target Start/End: Original strand, 26062546 - 26062595
Alignment:
Q  63 atatttgtagggaacaaaaacatatttaatcataacttttttaaaaagat 112  Q
    |||||||||||||  |||||||||||||||||||||||||||||||||||    
T  26062546 atatttgtagggactaaaaacatatttaatcataacttttttaaaaagat 26062595  T

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Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 63 - 112
Target Start/End: Original strand, 26068285 - 26068334
Alignment:
Q  63 atatttgtagggaacaaaaacatatttaatcataacttttttaaaaagat 112  Q
    |||||||||||||  |||||||||||||||||||||||||||||||||||    
T  26068285 atatttgtagggactaaaaacatatttaatcataacttttttaaaaagat 26068334  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 59
Target Start/End: Original strand, 37379115 - 37379149
Alignment:
Q  25 aaaagtggtgattgaaaattttacaaaaactaaaa 59  Q
    ||||||||||||||||||||||| |||||||||||    
T  37379115 aaaagtggtgattgaaaattttataaaaactaaaa 37379149  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 59
Target Start/End: Original strand, 13574957 - 13574993
Alignment:
Q  23 taaaaagtggtgattgaaaattttacaaaaactaaaa 59  Q
    ||||||||||||||||||||||||| ||| |||||||    
T  13574957 taaaaagtggtgattgaaaattttataaagactaaaa 13574993  T

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