View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11386A_low_433 (Length: 230)
Name: NF11386A_low_433
Description: NF11386A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11386A_low_433 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 184; Significance: 1e-99; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 41222988 - 41222765
Alignment:
| Q |
1 |
atgtaatttgatgccttcagaagcaccgatgtcacttgttatttgatttcatccaactttgcatgattcaacatggagaagacatgacatattggtgact |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
41222988 |
atgtaatttgatgccttcagaagcaccgatgtcacttgttatttgatttcatccaactttgcaggattcaacatggagaagacatgacatattggtgact |
41222889 |
T |
|
| Q |
101 |
atgttgttttactatgtagcttgtgttgtagcatatacgtagagatcgttctatttcactggttaaaggagtatttgttgtgtcacactggttctaggaa |
200 |
Q |
| |
|
||||||| ||||||||||||| |||||||||||||| ||||||||| ||||||||||||||||| || ||||| |||||||||| |||||||||||||| |
|
|
| T |
41222888 |
atgttgtggtactatgtagcttatgttgtagcatatatgtagagatcattctatttcactggttacagtagtatgtgttgtgtcaaactggttctaggaa |
41222789 |
T |
|
| Q |
201 |
caatactttattattgggttgcac |
224 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
41222788 |
caatactttattattgggttgcac |
41222765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 16234032 - 16234263
Alignment:
| Q |
1 |
atgtaatttgatgccttcagaagcaccgatgtcacttgttatttgatttcatccaactttgcatgattcaacatggagaagacatgacatattggtgac- |
99 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
16234032 |
atgtaatttgatgccttcagaagcaccgatgtcacttgttattggatttcatccaactttgcaggattcaacatggagaagacatgacatattggtgact |
16234131 |
T |
|
| Q |
100 |
---tatgttgttttactatgtagcttgtgttgtagcata----tacgtagagatcgttctatttcactggttaaaggagtatttgttgtgtcacactggt |
192 |
Q |
| |
|
||||||||||||||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16234132 |
atatatgttgttttactatggagcttatgttgtagcatatacgtacgtagagatcgttctatttcactggttaaaggagtatttgttgtgtcacactggt |
16234231 |
T |
|
| Q |
193 |
tctaggaacaatactttattattgggttgcac |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
16234232 |
tctaggaacaatactttattattgggttgcac |
16234263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 23 - 101
Target Start/End: Complemental strand, 41217174 - 41217096
Alignment:
| Q |
23 |
gcaccgatgtcacttgttatttgatttcatccaactttgcatgattcaacatggagaagacatgacatattggtgacta |
101 |
Q |
| |
|
|||| ||| ||| |||||| ||||||||||||||| ||||| |||||| ||| ||||||||||||||||||||||||| |
|
|
| T |
41217174 |
gcactgatatcaattgttacttgatttcatccaaccttgcaggattcacaatgaagaagacatgacatattggtgacta |
41217096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 224
Target Start/End: Complemental strand, 41217055 - 41217009
Alignment:
| Q |
178 |
ttgtgtcacactggttctaggaacaatactttattattgggttgcac |
224 |
Q |
| |
|
||||||||||||||||||||||| ||| |||||| ||||||||||| |
|
|
| T |
41217055 |
ttgtgtcacactggttctaggaataatgttttatttttgggttgcac |
41217009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 4 - 224
Target Start/End: Original strand, 1598683 - 1598903
Alignment:
| Q |
4 |
taatttgatgccttcagaagcaccgatgtcacttgttatttgatttcatccaactttgcatgattcaacatggagaagacatgacatattggtgactatg |
103 |
Q |
| |
|
||||||||||| ||||||| ||| ||| |||||||||| ||||||||||||| ||||||| |||| ||||||||||||||||||||||||| |||||||| |
|
|
| T |
1598683 |
taatttgatgctttcagaaacactgatatcacttgttacttgatttcatccatctttgcaggatttaacatggagaagacatgacatattgttgactatg |
1598782 |
T |
|
| Q |
104 |
ttgttttactatgtagcttgtgttgtagcatatacgtagagatcgttctatttcactggttaaaggagtatttgttgtgtcacactggttctaggaacaa |
203 |
Q |
| |
|
| | |||||||||| ||| || |||||||||| ||| || ||| | ||||||||| |||| || ||||| | ||||||||| || ||||||| ||||| |
|
|
| T |
1598783 |
tcctgttactatgtaacttaggtcgtagcatatatgtaaagttcggtttatttcactagttatagtagtatattttgtgtcacgcttgttctagaaacaa |
1598882 |
T |
|
| Q |
204 |
tactttattattgggttgcac |
224 |
Q |
| |
|
||| || || || |||||||| |
|
|
| T |
1598883 |
tacattgttttttggttgcac |
1598903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University