View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11386A_low_438 (Length: 230)
Name: NF11386A_low_438
Description: NF11386A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11386A_low_438 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 6 - 230
Target Start/End: Original strand, 526807 - 527033
Alignment:
| Q |
6 |
accttactgagttactgtcctgcatagtcattaacttttccaattaagtgaccgtaactgtgactgtcaaatacattaattgatat--tttacctcttct |
103 |
Q |
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| T |
526807 |
accttactgagttactgtcctgcatagtcattaacttttccaattaagtgaccgtaactgtgactgtcaaatacattaattgatatattttacctcttct |
526906 |
T |
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| Q |
104 |
acacatttgcttctgatcacattgttgaatcaatatttttgaattcctgttctggcaggttataagagtaacaaagaaacaagcaacatgtttaatactc |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
526907 |
acacatttgcttctgatcacattgttgaatcaatatttttgaattcctgttctggcaggttataagagtaacaaagaaacaagcaacatgtttaatactc |
527006 |
T |
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| Q |
204 |
cacatcaaaaacacagcaagaacatgt |
230 |
Q |
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||||||||||||||||||||||||||| |
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| T |
527007 |
cacatcaaaaacacagcaagaacatgt |
527033 |
T |
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