View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11386A_low_439 (Length: 230)
Name: NF11386A_low_439
Description: NF11386A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11386A_low_439 |
 | |
|
| [»] chr4 (2 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 7 - 230
Target Start/End: Original strand, 35922112 - 35922335
Alignment:
| Q |
7 |
cttagtttcaggcaacatgaaatacacaaagaatgtcatcaccactacaaagaaggcaaagaagataaacaagccaaacttcatgtgacagagcagggtt |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35922112 |
cttagtttcaggcaacatgaaatacacaaagaatgtcatcaccactacaaagaaggcaaagaagataaacaagccaaacttcatgtgacagagcagggtt |
35922211 |
T |
|
| Q |
107 |
aagaaaacttgtgcaacaaagaatgtgaaaaacatgttcacagatacattgacactttgagcagccgatcgaatctccaatggaaagatctcacttgtca |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35922212 |
aagaaaacttgtgcaacaaagaatgtgaaaaacatgttcacagatacattgacactttgagcagccgatcgaatctccaatggaaagatctcacttgtca |
35922311 |
T |
|
| Q |
207 |
ccaaccaaccaagaggaccccatg |
230 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
35922312 |
ccaaccaaccaagaggaccccatg |
35922335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 8 - 230
Target Start/End: Complemental strand, 36202934 - 36202712
Alignment:
| Q |
8 |
ttagtttcaggcaacatgaaatacacaaagaatgtcatcaccactacaaagaaggcaaagaagataaacaagccaaacttcatgtgacagagcagggtta |
107 |
Q |
| |
|
|||||||||||||| | ||| | ||| ||| || |||||||| ||||||||||||||||||| ||||| ||||||||||||||||| |||| | | |
|
|
| T |
36202934 |
ttagtttcaggcaataagaagaatacatagattgacatcaccaaaacaaagaaggcaaagaagaggaacaaaccaaacttcatgtgacaaagcattatca |
36202835 |
T |
|
| Q |
108 |
agaaaacttgtgcaacaaagaatgtgaaaaacatgttcacagatacattgacactttgagcagccgatcgaatctccaatggaaagatctcacttgtcac |
207 |
Q |
| |
|
|||||||||||||||| ||||| ||||||| ||||||||||||||| || ||||||||||| || || |||||||||||||| || |||||||| | || |
|
|
| T |
36202834 |
agaaaacttgtgcaactaagaaggtgaaaagcatgttcacagatacgtttacactttgagctgcagaacgaatctccaatgggaaaatctcactaggaac |
36202735 |
T |
|
| Q |
208 |
caaccaaccaagaggaccccatg |
230 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
36202734 |
caaccaaccaagaggaccccatg |
36202712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 128 - 228
Target Start/End: Original strand, 1238993 - 1239093
Alignment:
| Q |
128 |
aatgtgaaaaacatgttcacagatacattgacactttgagcagccgatcgaatctccaatggaaagatctcacttgtcaccaaccaaccaagaggacccc |
227 |
Q |
| |
|
|||||||||| |||||| || || ||||||||||||||||| || ||||||| ||| | |||||| || ||||||| ||||||||| ||||||||||||| |
|
|
| T |
1238993 |
aatgtgaaaatcatgttaaccgaaacattgacactttgagccgctgatcgaacctcaagtggaaaaatttcacttggcaccaaccatccaagaggacccc |
1239092 |
T |
|
| Q |
228 |
a |
228 |
Q |
| |
|
| |
|
|
| T |
1239093 |
a |
1239093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 128 - 228
Target Start/End: Original strand, 42517612 - 42517712
Alignment:
| Q |
128 |
aatgtgaaaaacatgttcacagatacattgacactttgagcagccgatcgaatctccaatggaaagatctcacttgtcaccaaccaaccaagaggacccc |
227 |
Q |
| |
|
|||||||||| |||||| ||||| ||||||||||||||||| || ||||| | ||| | ||| || || ||||||| ||||||||| ||||||||||||| |
|
|
| T |
42517612 |
aatgtgaaaatcatgttaacagaaacattgacactttgagctgctgatcgcacctcaagtgggaaaatttcacttggcaccaaccatccaagaggacccc |
42517711 |
T |
|
| Q |
228 |
a |
228 |
Q |
| |
|
| |
|
|
| T |
42517712 |
a |
42517712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 228
Target Start/End: Complemental strand, 1356889 - 1356829
Alignment:
| Q |
168 |
cagccgatcgaatctccaatggaaagatctcacttgtcaccaaccaaccaagaggacccca |
228 |
Q |
| |
|
|||| |||| ||||||||||||||| |||||||||| || |||||||| || |||||||| |
|
|
| T |
1356889 |
cagctgatctaatctccaatggaaaaatctcacttggtactaaccaacctagtggacccca |
1356829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 128 - 228
Target Start/End: Original strand, 41971499 - 41971599
Alignment:
| Q |
128 |
aatgtgaaaaacatgttcacagatacattgacactttgagcagccgatcgaatctccaatggaaagatctcacttgtcaccaaccaaccaagaggacccc |
227 |
Q |
| |
|
|||||||||| |||||| || || ||||||||||||||||| || ||||| | ||| | |||||| | ||||||| ||||||||| ||||||||||||| |
|
|
| T |
41971499 |
aatgtgaaaatcatgttaaccgaaacattgacactttgagccgctgatcgcacctcaagtggaaaagtttcacttggcaccaaccatccaagaggacccc |
41971598 |
T |
|
| Q |
228 |
a |
228 |
Q |
| |
|
| |
|
|
| T |
41971599 |
a |
41971599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 41 - 228
Target Start/End: Original strand, 18233799 - 18233986
Alignment:
| Q |
41 |
gtcatcaccactacaaagaaggcaaagaagataaacaagccaaacttcatgtgacagagcagggttaagaaaacttgtgcaacaaagaatgtgaaaaaca |
140 |
Q |
| |
|
|||||||| || || || ||||| ||||||||||| || ||||||||||||||||| |||| || ||||| ||| |||| | || ||| ||| || |
|
|
| T |
18233799 |
gtcatcacaacaacgaaaaaggcgaagaagataaataatccaaacttcatgtgacaaagcattgtagtgaaaatttgagcaatgataaaggtgcaaatca |
18233898 |
T |
|
| Q |
141 |
tgttcacagatacattgacactttgagcagccgatcgaatctccaatggaaagatctcacttgtcaccaaccaaccaagaggacccca |
228 |
Q |
| |
|
|||| ||||| ||||||| ||||||||| || || |||| || | ||| || || ||||||| |||||||||||| ||||||||||| |
|
|
| T |
18233899 |
tgttaacagagacattgatactttgagccgcagaacgaacttcgagtgggaatatttcacttggcaccaaccaacctagaggacccca |
18233986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University