View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11386A_low_442 (Length: 230)
Name: NF11386A_low_442
Description: NF11386A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11386A_low_442 |
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Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 42969223 - 42968999
Alignment:
| Q |
1 |
gacataagaaggaattggcataagctatcagttctaactgtcacaatgcttattttgctcatagggatttattcaattggatgttgtgctttcagaaatg |
100 |
Q |
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| T |
42969223 |
gacataagaaggaattggcataagctatcagttctaactgtcacaatgcttattttgctcatagggatttattcaattggatgttgtgcttttagaaatg |
42969124 |
T |
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| Q |
101 |
caagaagagctgaaacagattatccatatggtgaaaatcggatgaccaaagttagacccagatgggattaccattggtaagtccaatatatgtgatgaaa |
200 |
Q |
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| T |
42969123 |
caagaagagctgaaacagattatccatatggtgaaaatcggatgaccaaagttagacccagatgggattaccattggtaagtccaatatatgtgatcaaa |
42969024 |
T |
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| Q |
201 |
agttatatatgcatgcctataaatt |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
42969023 |
agttatatatgcatgcctataaatt |
42968999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 61 - 182
Target Start/End: Complemental strand, 10678324 - 10678203
Alignment:
| Q |
61 |
atagggatttattcaattggatgttgtgctttcagaaatgcaagaagagctgaaacagattatccatatggtgaaaatcggatgaccaaagttagaccca |
160 |
Q |
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||||| || ||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||||||||||| |||| ||||||||||| | |
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| T |
10678324 |
ataggaatatattctattggatgttgtgctttcagaaatgcaagaagatctgaaactgattatccacatggtgaaaatcgtatgaggaaagttagaccta |
10678225 |
T |
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| Q |
161 |
gatgggattaccattggtaagt |
182 |
Q |
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| T |
10678224 |
gatgggattactattggtaagt |
10678203 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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