View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11386A_low_448 (Length: 230)
Name: NF11386A_low_448
Description: NF11386A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11386A_low_448 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 5 - 230
Target Start/End: Complemental strand, 52242900 - 52242680
Alignment:
| Q |
5 |
caatttctactagatttccattgccacctaactctgtcctcggtgacaattcaaattattatcatttcaaaattctcttcactgacatcattgttctttc |
104 |
Q |
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| T |
52242900 |
caatttctactagatttccagtgccacctaactctgtccttggtgacaattcaaattattattatttcaaaattctcttcactgacatcattgttctttc |
52242801 |
T |
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| Q |
105 |
tcacaaacctctcagttcagttcagttctgttctgttctgttatgttccattcctcgctataacaataacaatttcccgccagattttgaatggagagat |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52242800 |
tcacaaacctctcagttcagttcagttctgttctgttccatt-----ccattcctcgctataacaataacaatttcccgccagattttgaatggagagat |
52242706 |
T |
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| Q |
205 |
tttatagttattctgaacaacgagag |
230 |
Q |
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|||||||||||||||||||||||||| |
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| T |
52242705 |
tttatagttattctgaacaacgagag |
52242680 |
T |
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