View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11386A_low_449 (Length: 230)
Name: NF11386A_low_449
Description: NF11386A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11386A_low_449 |
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Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 34405232 - 34405455
Alignment:
| Q |
1 |
atatgcatcaatagatttgaaatcttacatcatacaaataactttgtctagggattggacttgcgagttgtggagaatgttgaagaagctgagtttgttt |
100 |
Q |
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|||||||||||||| |||||||||||||| |||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34405232 |
atatgcatcaatagctttgaaatcttacagcatataaataactttgtctagggcttggacttgcgagttgtggagaatgttgaagaagctgagtttgttt |
34405331 |
T |
|
| Q |
101 |
tggctcatgggactgaagccttgggggatgccaatgggaatgcccgttcaatgaaacttgaagcccttgaaaaaatattggagctttgcgctgcaaaaag |
200 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |
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| T |
34405332 |
tggctcatgggactgaagccttggggggtgccaatgggaatgcacgttcaatgaaacttgaagaccttgaacaaatattggagctttgcgctgcaaaaag |
34405431 |
T |
|
| Q |
201 |
gattcctatggtggtagccaatcc |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
34405432 |
gattcctatggtggtagccaatcc |
34405455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 34399558 - 34399781
Alignment:
| Q |
1 |
atatgcatcaatagatttgaaatcttacatcatacaaataactttgtctagggattggacttgcgagttgtggagaatgttgaagaagctgagtttgttt |
100 |
Q |
| |
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|||||||||||||| |||||||||||||| |||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34399558 |
atatgcatcaatagctttgaaatcttacagcatataaataactttgtctagggcttggacttgcgagttgtggagaatgttgaagaagctgagtttgttt |
34399657 |
T |
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| Q |
101 |
tggctcatgggactgaagccttgggggatgccaatgggaatgcccgttcaatgaaacttgaagcccttgaaaaaatattggagctttgcgctgcaaaaag |
200 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |
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| T |
34399658 |
tggctcatgggactgaagccttggggggtgccaatgggaatgcacgttcaatgaaacttgaagaccttgaacaaatattggagctttgcgctgcaaaaag |
34399757 |
T |
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| Q |
201 |
gattcctatggtggtagccaatcc |
224 |
Q |
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|||||||||||||||||| ||||| |
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| T |
34399758 |
gattcctatggtggtagcgaatcc |
34399781 |
T |
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Back To:
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