View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11386A_low_45 (Length: 419)
Name: NF11386A_low_45
Description: NF11386A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11386A_low_45 |
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Alignment Details
Target: chr5 (Bit Score: 314; Significance: 1e-177; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 21 - 373
Target Start/End: Original strand, 39956376 - 39956731
Alignment:
| Q |
21 |
aaaccaaaccactctaaactctccaaacccctttactataaatagacacagcatgtcaacctagtagtcacgaaagcgacttcattaacaatcgcaaaac |
120 |
Q |
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| T |
39956376 |
aaaccaaaccactctaaactctcgaaacccctttactataaatagacacagcatgtcaacctagtagtcacgaaagcgacttcattaacaatcgcaaaac |
39956475 |
T |
|
| Q |
121 |
aaaaaccaaacactcaacacaaccacactcttcactcat---cttcatcgtaacatggcttcagaacctcatcgacgtgacgtcgaaacctccgatgaac |
217 |
Q |
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| T |
39956476 |
aaaaaccaaacactcaacacaaccacacttttcactcatcatcttcatcgtaacatggcttcagaacctcatcgacgtgacgtcgaaacctccgatgaac |
39956575 |
T |
|
| Q |
218 |
aacttgatgagatttccgttgaaaaggggtttgaaggaaaatctgttccttcgtggcagaaacaggttacggttagggcaatagtagtgagtatcatgtt |
317 |
Q |
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| T |
39956576 |
aacttgatgagatttccattgaaaaagggtttgaaggaaaatctgttccttcgtggcagaaacaggttacggctagggcaatagtcgtgagtatcatgct |
39956675 |
T |
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| Q |
318 |
atcagtgatgttcactttcattgtgatgaagctgaatctcactactgggattattc |
373 |
Q |
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| T |
39956676 |
atcagtgatgttcactttcattgtgatgaagctgaatctcactactgggattattc |
39956731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 90 - 408
Target Start/End: Original strand, 39940766 - 39941085
Alignment:
| Q |
90 |
acgaaagcgacttcattaacaatcgcaaaacaaaaaccaaacactca-acacaaccacactcttcactcatcttcatcgtaacatggcttcagaacctca |
188 |
Q |
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| T |
39940766 |
acgaaagcgacttcattaacaatcgcaaaatcaaaaccaaacactctgatacaaccacactcttcactcatcttcatcgtaacatggctccagaacctca |
39940865 |
T |
|
| Q |
189 |
tcgacgtgacgtcgaaacctccgatgaacaacttgatgagatttccgttgaaaaggggtttgaaggaaaatctgttccttcgtggcagaaacaggttacg |
288 |
Q |
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| T |
39940866 |
tcgacgtgacgtcgaaacctccgatgaacaacttgatgagatttccattgaaaaagggtttgaaggaaaatctgttccttcgtggcagaaacaggttact |
39940965 |
T |
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| Q |
289 |
gttagggcaatagtagtgagtatcatgttatcagtgatgttcactttcattgtgatgaagctgaatctcactactgggattattccctctttgaatgttt |
388 |
Q |
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| T |
39940966 |
gttagggcaatagtcgtgagtatcatgctatcagtgatgttcactttcattgtgatgaagctgaatctcactactgggattattccctctttgaatgttt |
39941065 |
T |
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| Q |
389 |
cggctgggttgttagggttc |
408 |
Q |
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| T |
39941066 |
cggctgggttgttagggttc |
39941085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 101; Significance: 6e-50; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 211 - 407
Target Start/End: Complemental strand, 28750890 - 28750694
Alignment:
| Q |
211 |
gatgaacaacttgatgagatttccgttgaaaaggggtttgaaggaaaatctgttccttcgtggcagaaacaggttacggttagggcaatagtagtgagta |
310 |
Q |
| |
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||||||||||| || |||||||| || ||||| ||||||||||||| |||||||||| |||||||||||||||| || |||||||||||| | | |||| |
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| T |
28750890 |
gatgaacaactcgaggagatttctgtggaaaaagggtttgaaggaacatctgttcctacgtggcagaaacaggtcactgttagggcaatatttgcgagtc |
28750791 |
T |
|
| Q |
311 |
tcatgttatcagtgatgttcactttcattgtgatgaagctgaatctcactactgggattattccctctttgaatgtttcggctgggttgttagggtt |
407 |
Q |
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| T |
28750790 |
tcatgttgtcggtgatgttcacgtttatcgtgatgaagttgaatctcacaactgggattattccttcgttgaatgtttctgctggattgttagggtt |
28750694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 236 - 407
Target Start/End: Complemental strand, 28742020 - 28741849
Alignment:
| Q |
236 |
ttgaaaaggggtttgaaggaaaatctgttccttcgtggcagaaacaggttacggttagggcaatagtagtgagtatcatgttatcagtgatgttcacttt |
335 |
Q |
| |
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||||||| ||||||||||||||| ||||||| |||||||||| |||||||| ||||||||| || | |||||| ||||||| || || |||||||| || |
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| T |
28742020 |
ttgaaaaagggtttgaaggaaaacttgttcctacgtggcagaagcaggttactgttagggcattattcgtgagtctcatgttgtcggtaatgttcacgtt |
28741921 |
T |
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| Q |
336 |
cattgtgatgaagctgaatctcactactgggattattccctctttgaatgtttcggctgggttgttagggtt |
407 |
Q |
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| T |
28741920 |
cattgtgatgaaactgaatctcacaactgggattattccttctttgaatgtttcagctgggttgttagggtt |
28741849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 210 - 404
Target Start/End: Complemental strand, 7963852 - 7963656
Alignment:
| Q |
210 |
cgatgaacaacttgatgagatttccgttgaaaaggggtttgaaggaaaa-tctgttccttcgtggcagaaacaggttacggttagggcaatagtagtgag |
308 |
Q |
| |
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|||||||||| | || ||||||| || ||||| | ||||||||||||| || ||||| ||||||||| | |||| ||||||| | ||| | ||||| |
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| T |
7963852 |
cgatgaacaattagaggagatttatgtggaaaaagtgtttgaaggaaaaatcaattcctatatggcagaaaaatgttatggttaggcctatattcgtgag |
7963753 |
T |
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| Q |
309 |
tatcatgtta-tcagtgatgttcactttcattgtgatgaagctgaatctcactactgggattattccctctttgaatgtttcggctgggttgttagg |
404 |
Q |
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| T |
7963752 |
tctcatgttggtcgatgatgttcacattcatcatgatgaatctgaatctcacaactgggattattcattcgttgaatgtttttgctgggttgttagg |
7963656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 239 - 394
Target Start/End: Complemental strand, 7961298 - 7961143
Alignment:
| Q |
239 |
aaaaggggtttgaaggaaaatctgttccttcgtggcagaaacaggttacggttagggcaatagtagtgagtatcatgttatcagtgatgttcactttcat |
338 |
Q |
| |
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|||| ||||||||||||||||| |||||| |||||| || | || ||||||| ||| ||| | |||||| || | || | || |||||||| ||||| |
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| T |
7961298 |
aaaaagggtttgaaggaaaatcagttcctatgtggcaccaaaatgtcacggttatggctatattcgtgagtctcgttttgacggtaatgttcacattcat |
7961199 |
T |
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| Q |
339 |
tgtgatgaagctgaatctcactactgggattattccctctttgaatgtttcggctg |
394 |
Q |
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||||||||||| |||||||| ||||| |||||||| || || |||||||| |||| |
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| T |
7961198 |
cgtgatgaagctcaatctcacaactggaattattccttcattaaatgtttctgctg |
7961143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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