View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11386A_low_452 (Length: 230)
Name: NF11386A_low_452
Description: NF11386A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11386A_low_452 |
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Alignment Details
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 42861862 - 42862086
Alignment:
| Q |
1 |
aatgaaatcaaagatcacctcagttttgctgattttgggacgttttctgcagttcagatggctattggtcgttt-gagaacatcaaacttgctctatcca |
99 |
Q |
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| T |
42861862 |
aatgaaatcaaagatcacctcagttttgccgattttgggacgttttctgcagttcagatggctattggtcgttttgagaacatcaaacttgctctatcca |
42861961 |
T |
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| Q |
100 |
attatcatggtgtgcatcaagaacaacaggaagtttgtgggtgtattcaagaattgatacagcatcgaacaaatgtgaatggtaagcatgaggaacttaa |
199 |
Q |
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| T |
42861962 |
attatcatggtgtgcatcaagaacaacaggaagtttgtgggtgtattcaagaattgatacagcatcgaacaaatgtgaatggtaagcatgaggaacttaa |
42862061 |
T |
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| Q |
200 |
ccaaagaaaacaacaagtctctaac |
224 |
Q |
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| T |
42862062 |
ccaaagaaaacaacaagtctctaac |
42862086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 78 - 211
Target Start/End: Original strand, 27574725 - 27574858
Alignment:
| Q |
78 |
aacatcaaacttgctctatccaattatcatggtgtgcatcaagaacaacaggaagtttgtgggtgtattcaagaattgatacagcatcgaacaaatgtga |
177 |
Q |
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|||||||||||||| ||||||| ||||||| |||||||||||||||||| | |||| ||||||| ||||||| |||||||| | ||||||| |||||| |
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| T |
27574725 |
aacatcaaacttgccctatccacctatcatgatgtgcatcaagaacaacaaggagttcttgggtgtcttcaagagttgatacaacgtcgaacagatgtga |
27574824 |
T |
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| Q |
178 |
atggtaagcatgaggaacttaaccaaagaaaaca |
211 |
Q |
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| T |
27574825 |
atgacaagcacgaggaactcaaccagagaaaaca |
27574858 |
T |
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