View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11386A_low_456 (Length: 229)
Name: NF11386A_low_456
Description: NF11386A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11386A_low_456 |
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| [»] chr6 (2 HSPs) |
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| [»] scaffold0005 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 30750730 - 30750502
Alignment:
| Q |
1 |
gaacataccccaacaagcatcaataaataatatagcttctctaaattcttgaaaccctaacttcaatccttgcaccaattccttgcttcttgctcaccca |
100 |
Q |
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| T |
30750730 |
gaacataccccaacaagcatcaataaataatatagcttctctaaattcttgaaaccctaacttgaatccttgcaccaattccttgcttcttcctcaccca |
30750631 |
T |
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| Q |
101 |
ttaacatttagatcttctttaggtcgagtgagaggataagaaatatggataggagtgtttataattctggtttttaattacaaatttgaggcacaaacaa |
200 |
Q |
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|||||||||| |||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30750630 |
ttaacatttaaatcttctttaggtcgagtgagacggtaagaaatatggataggagtgtttataattctggtttttaattacaaatttgaggcacaaacaa |
30750531 |
T |
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| Q |
201 |
tctaacacacatgcatccaatcttcttag |
229 |
Q |
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||||| |||||||||||||| ||||||| |
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| T |
30750530 |
tctaaaacacatgcatccaactttcttag |
30750502 |
T |
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Target: chr6; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 30760624 - 30760552
Alignment:
| Q |
1 |
gaacataccccaacaagcatcaataaataatatagcttctctaaattcttgaaaccctaacttcaatccttgc |
73 |
Q |
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| T |
30760624 |
gaacataccccaacaagcatcaataaataatatagcttctctaaattcttgaaaccctaacttcaatccttgc |
30760552 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 110
Target Start/End: Complemental strand, 241546 - 241502
Alignment:
| Q |
66 |
atccttgcaccaattccttgcttcttgctcacccattaacattta |
110 |
Q |
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| T |
241546 |
atccttgcacaaattccttgcttcttcctcacccatcaacattta |
241502 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 110
Target Start/End: Original strand, 14575829 - 14575873
Alignment:
| Q |
66 |
atccttgcaccaattccttgcttcttgctcacccattaacattta |
110 |
Q |
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| T |
14575829 |
atccttgcacaaattccttgcttcttcctcacccatcaacattta |
14575873 |
T |
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