View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11386A_low_464 (Length: 229)
Name: NF11386A_low_464
Description: NF11386A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11386A_low_464 |
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| [»] scaffold0039 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 24486328 - 24486106
Alignment:
| Q |
1 |
atgtcaggggctaagtcggtcaacactccattatgtatgactactcctctcaagctgaatgatggatctgccgctgctgattccaagatgtttcgtagta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24486328 |
atgtcaggggctaagtcggtcaacactccattatgtatgactactcctctcaagctgaatgatggatctgccgctgctgattccaagatgtttcgtagta |
24486229 |
T |
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| Q |
101 |
tgattggtgcactgcagtacatcactttaaccaggccagatctctcatttgcaataaataaattgtcacaatttatgcatcaaccaactgaaatgcactt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24486228 |
tgattggtgcactgcagtacatcactttaaccaggccagatctctcatttgcaataaataaattgtcacaatttatgcatcaaccaactgaaatgcactt |
24486129 |
T |
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| Q |
201 |
tcagcaactcaaacgagtggtaa |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
24486128 |
tcagcaactcaaacgagtggtaa |
24486106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 24494662 - 24494440
Alignment:
| Q |
1 |
atgtcaggggctaagtcggtcaacactccattatgtatgactactcctctcaagctgaatgatggatctgccgctgctgattccaagatgtttcgtagta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
24494662 |
atgtcaggggctaagtcggtcaacactccattatgtatgactactcctctcaagctgaatgatggatctgacgctgctgattccaagatgtttcgtagta |
24494563 |
T |
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| Q |
101 |
tgattggtgcactgcagtacatcactttaaccaggccagatctctcatttgcaataaataaattgtcacaatttatgcatcaaccaactgaaatgcactt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24494562 |
tgattggtgcactgcagtacatcactttaaccaggccagatctctcatttgcaataaataaattgtcacaatttatgcatcaaccaactgaaatgcactt |
24494463 |
T |
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| Q |
201 |
tcagcaactcaaacgagtggtaa |
223 |
Q |
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||||||||||||| ||||||||| |
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| T |
24494462 |
tcagcaactcaaaagagtggtaa |
24494440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 34295697 - 34295919
Alignment:
| Q |
1 |
atgtcaggggctaagtcggtcaacactccattatgtatgactactcctctcaagctgaatgatggatctgccgctgctgattccaagatgtttcgtagta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
34295697 |
atgtcaggggctaagtcggtcaacactccattatgtatgactactcctctcaagctgaatgatggatctgtcgctgctgattccaagatgtttcgtagta |
34295796 |
T |
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| Q |
101 |
tgattggtgcactgcagtacatcactttaaccaggccagatctctcatttgcaataaataaattgtcacaatttatgcatcaaccaactgaaatgcactt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34295797 |
tgattggtgcactgcagtacatcactttaaccaggccagatctctcatttgcaataaataaattgtcacaatttatgcatcaaccaactgaaatgcactt |
34295896 |
T |
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| Q |
201 |
tcagcaactcaaacgagtggtaa |
223 |
Q |
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||||||||||||| ||||||||| |
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| T |
34295897 |
tcagcaactcaaatgagtggtaa |
34295919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0039 (Bit Score: 99; Significance: 5e-49; HSPs: 1)
Name: scaffold0039
Description:
Target: scaffold0039; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 25 - 219
Target Start/End: Complemental strand, 58752 - 58558
Alignment:
| Q |
25 |
actccattatgtatgactactcctctcaagctgaatgatggatctgccgctgctgattccaagatgtttcgtagtatgattggtgcactgcagtacatca |
124 |
Q |
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|||||||| || ||||||||||||||||| || |||||||| || ||| |||||||||| || ||||||||||| || ||||| ||||| || ||||||| |
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| T |
58752 |
actccattgtgcatgactactcctctcaaactaaatgatggttcagcccctgctgattcaaaaatgtttcgtagcattattggagcacttcaatacatca |
58653 |
T |
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| Q |
125 |
ctttaaccaggccagatctctcatttgcaataaataaattgtcacaatttatgcatcaaccaactgaaatgcactttcagcaactcaaacgagtg |
219 |
Q |
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| T |
58652 |
cattaactaggcctgatctctcatttgcaataaacaaattgtcgcaatttatgcatcaaccaactgaagtgcatttccagcgactcaaaagagtg |
58558 |
T |
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