View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11386A_low_472 (Length: 229)
Name: NF11386A_low_472
Description: NF11386A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11386A_low_472 |
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| [»] chr2 (2 HSPs) |
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| [»] chr8 (1 HSPs) |
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| [»] scaffold0531 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 6 - 229
Target Start/End: Original strand, 43852971 - 43853194
Alignment:
| Q |
6 |
acctctttcccattaggaccgaagggttaacacaaaaaataattgtgaaactattaccactaatttgacatctcaaggacgtttaaatcacaatgaaaca |
105 |
Q |
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| T |
43852971 |
acctctttcccattaggaccgaagggttaacacaaaaaataattgtgaaactattaccactaatttgacatctcaaggacgtttaaatcacaatgaaaca |
43853070 |
T |
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| Q |
106 |
taagtttgtttatgttttacaatgtcgaattgcaggggtcctggtgtggtgattctaatcttatcttggataatcaccctctacactctatggcaaatgg |
205 |
Q |
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| T |
43853071 |
taagtttgtttatgttttacaatgtcgaattgcaggggtcctggtgtggtgattctaatcttatcatggataatcaccctctacactctatggcaaatgg |
43853170 |
T |
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| Q |
206 |
ttgaaatgcatgaaatggttccag |
229 |
Q |
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| T |
43853171 |
ttgaaatgcatgaaatggttccag |
43853194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 227
Target Start/End: Complemental strand, 41382336 - 41382281
Alignment:
| Q |
172 |
tggataatcaccctctacactctatggcaaatggttgaaatgcatgaaatggttcc |
227 |
Q |
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| T |
41382336 |
tggatcatcactctctacaccctgtggcaaatggttgagatgcatgagatggttcc |
41382281 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 172 - 229
Target Start/End: Original strand, 34409203 - 34409260
Alignment:
| Q |
172 |
tggataatcaccctctacactctatggcaaatggttgaaatgcatgaaatggttccag |
229 |
Q |
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| T |
34409203 |
tggataatcacattgttcactctatggcaaatggttgaaatgcatgaaatggtgccag |
34409260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 227
Target Start/End: Complemental strand, 7979505 - 7979450
Alignment:
| Q |
172 |
tggataatcaccctctacactctatggcaaatggttgaaatgcatgaaatggttcc |
227 |
Q |
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| T |
7979505 |
tggatcatcacattctacacactttggcaaatggttgagatgcatgaaatggttcc |
7979450 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 227
Target Start/End: Complemental strand, 38827464 - 38827422
Alignment:
| Q |
185 |
tctacactctatggcaaatggttgaaatgcatgaaatggttcc |
227 |
Q |
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| T |
38827464 |
tctacactatatggcaaatggttgagatgcatgaaatagttcc |
38827422 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0531 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0531
Description:
Target: scaffold0531; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 227
Target Start/End: Complemental strand, 3469 - 3405
Alignment:
| Q |
163 |
atcttatcttggataatcaccctctacactctatggcaaatggttgaaatgcatgaaatggttcc |
227 |
Q |
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| T |
3469 |
atcttatcatggatcatcactctgtatacattgtggcaaatggttgagatgcatgaaatggttcc |
3405 |
T |
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