View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11386A_low_474 (Length: 228)
Name: NF11386A_low_474
Description: NF11386A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11386A_low_474 |
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Alignment Details
Target: chr1 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 22 - 207
Target Start/End: Original strand, 3429012 - 3429197
Alignment:
| Q |
22 |
cctaccactagtatctaccacatgattttactaaccaactagctagtgaaacacaatcactgcctatgttgtgaagaacaagaaccttcattttcttgtg |
121 |
Q |
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| T |
3429012 |
cctaccactagtatctaccacatgattttactaaccaactagctagtgaaacacaatcactgcctatgttgtgaagaacaagaaccttcattttcttgtg |
3429111 |
T |
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| Q |
122 |
aagtggaagtagttggaacaagtacaaggttgtcaatatctttgtcaatgatggacaaaactacaggggtagccaagaatgttggt |
207 |
Q |
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| T |
3429112 |
aagtggaagtagttggaacaagtacaaggttgtcaatatctttgtcaatgatggaaaaaactacaggggtagccaagaatgttggt |
3429197 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 36 - 206
Target Start/End: Original strand, 3425544 - 3425717
Alignment:
| Q |
36 |
ctaccacatgattttactaaccaactagctagtgaaacacaatcactgcctatgttgtgaagaacaagaacct---tcattttcttgtgaagtggaagta |
132 |
Q |
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| T |
3425544 |
ctaccacatgactttaccaacaaactaggtaatgaaacacaatcattgtctatgttgtgaagagcaagaacctacttcattttcttgtgaagtggaagta |
3425643 |
T |
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| Q |
133 |
gttggaacaagtacaaggttgtcaatatctttgtcaatgatggacaaaactacaggggtagccaagaatgttgg |
206 |
Q |
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| T |
3425644 |
gctggaacaagtacaaggttgtcaatttcattgttaatgatggacaaaactacaggggtagccaagaatgttgg |
3425717 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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