View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11386A_low_477 (Length: 228)
Name: NF11386A_low_477
Description: NF11386A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11386A_low_477 |
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| [»] scaffold0027 (1 HSPs) |
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Alignment Details
Target: scaffold0027 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: scaffold0027
Description:
Target: scaffold0027; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 52 - 228
Target Start/End: Complemental strand, 46325 - 46152
Alignment:
| Q |
52 |
tattcatttgaatcggtagataaaatcaagaacaataaaaattttgtgtcattgaaacttaaaagatgaatttgcaactaaatttacatcattgaagtca |
151 |
Q |
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| T |
46325 |
tattcatttaaatcggtagataaaatcaacaacaataaaaattttgtgtcattgaaacttaaaagatgaaattgcaactaaatttacatcattgaagtca |
46226 |
T |
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| Q |
152 |
atatcataaatcggtataataatgcctacaaaaagttacatgattaaagcgatctaaatacgcatttgaatatgtag |
228 |
Q |
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| T |
46225 |
atatcataaatcggta---taatgcctacaaaaagttacatgattaaagcgatctaaatacgcatttgaatatgtag |
46152 |
T |
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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 161
Target Start/End: Original strand, 51628989 - 51629039
Alignment:
| Q |
111 |
taaaagatgaatttgcaactaaatttacatcattgaagtcaatatcataaa |
161 |
Q |
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| T |
51628989 |
taaaagatgaatttgcaaataaattcacatcatttaagttaatagcataaa |
51629039 |
T |
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