View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11386A_low_478 (Length: 228)

Name: NF11386A_low_478
Description: NF11386A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11386A_low_478
NF11386A_low_478
[»] chr7 (4 HSPs)
chr7 (1-220)||(1077989-1078208)
chr7 (170-219)||(3927063-3927112)
chr7 (164-220)||(24723357-24723413)
chr7 (148-220)||(39298980-39299052)
[»] chr3 (29 HSPs)
chr3 (5-220)||(12133100-12133315)
chr3 (148-220)||(2442042-2442114)
chr3 (146-220)||(4142108-4142182)
chr3 (147-220)||(2696707-2696780)
chr3 (171-220)||(3754603-3754652)
chr3 (172-220)||(2492085-2492133)
chr3 (148-220)||(7942488-7942560)
chr3 (157-220)||(989399-989462)
chr3 (169-220)||(4157941-4157992)
chr3 (158-220)||(9608330-9608392)
chr3 (159-220)||(968674-968735)
chr3 (172-220)||(771499-771547)
chr3 (160-220)||(1940567-1940627)
chr3 (172-220)||(2456252-2456300)
chr3 (172-220)||(2644362-2644410)
chr3 (172-220)||(2659152-2659200)
chr3 (144-220)||(13498227-13498303)
chr3 (169-220)||(803215-803266)
chr3 (169-220)||(1007464-1007515)
chr3 (169-220)||(1022492-1022543)
chr3 (157-220)||(1931139-1931202)
chr3 (169-212)||(7432051-7432094)
chr3 (172-220)||(754609-754657)
chr3 (164-220)||(768321-768377)
chr3 (148-220)||(783775-783847)
chr3 (148-220)||(1891040-1891112)
chr3 (172-220)||(2631360-2631408)
chr3 (172-220)||(7324431-7324479)
chr3 (156-220)||(7398163-7398227)
[»] scaffold0044 (1 HSPs)
scaffold0044 (148-219)||(89147-89218)
[»] chr5 (4 HSPs)
chr5 (146-220)||(11081816-11081890)
chr5 (169-220)||(1427690-1427741)
chr5 (169-220)||(23766859-23766910)
chr5 (169-220)||(23816707-23816758)
[»] chr6 (3 HSPs)
chr6 (160-222)||(370773-370835)
chr6 (164-217)||(1442100-1442153)
chr6 (174-219)||(9819831-9819876)
[»] chr2 (5 HSPs)
chr2 (151-213)||(6538844-6538906)
chr2 (149-220)||(7156169-7156240)
chr2 (157-220)||(11237696-11237759)
chr2 (170-220)||(7160752-7160802)
chr2 (149-221)||(7168667-7168739)
[»] chr4 (1 HSPs)
chr4 (157-221)||(22672112-22672176)


Alignment Details
Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 1077989 - 1078208
Alignment:
Q  1 agatttctggggtgttattaaatctagtggatgtaaaagtaccattccttaaatgaatcaacttcaaatttaaataccttggaaacttgagcagcaattg 100  Q
    |||||||||||||||||||||||| ||| ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||||| |||    
T  1077989 agatttctggggtgttattaaatccagtagatgtaaaagtaccattccttgaatcaatcaacttcaaatttaaataccttggaaacttcagcagcacttg 1078088  T
Q  101 attatcctcaaaaatatatattggctcaccaaatacactatatataggatctcccctgtaagaaacattgaacaatttagtccacgactctctatttcca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1078089 attatcctcaaaaatatatattggctcaccaaatacactatatttaggatctcccctgtaagaaacattgaacaatttagtccacgactctctatttcca 1078188  T
Q  201 tactccttcataacccaaac 220  Q
    ||||||||||||||||||||    
T  1078189 tactccttcataacccaaac 1078208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 219
Target Start/End: Complemental strand, 3927112 - 3927063
Alignment:
Q  170 gaacaatttagtccacgactctctatttccatactccttcataacccaaa 219  Q
    ||||||||||||||| || | | |||||||||| ||||||||||||||||    
T  3927112 gaacaatttagtccaagaatttttatttccataatccttcataacccaaa 3927063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 220
Target Start/End: Complemental strand, 24723413 - 24723357
Alignment:
Q  164 aacattgaacaatttagtccacgactctctatttccatactccttcataacccaaac 220  Q
    ||||| ||||||||||||||| || || ||||||  |||||||||||||| ||||||    
T  24723413 aacatggaacaatttagtccaagattcactatttatatactccttcataagccaaac 24723357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 220
Target Start/End: Complemental strand, 39299052 - 39298980
Alignment:
Q  148 gatctcccctgtaagaaacattgaacaatttagtccacgactctctatttccatactccttcataacccaaac 220  Q
    ||||| || |||||| |||| || | ||||||||||| |||||| |||||||| | ||||||| |||||||||    
T  39299052 gatcttccatgtaaggaacactgtaaaatttagtccaggactctttatttccacattccttcaaaacccaaac 39298980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 120; Significance: 2e-61; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 5 - 220
Target Start/End: Complemental strand, 12133315 - 12133100
Alignment:
Q  5 ttctggggtgttattaaatctagtggatgtaaaagtaccattccttaaatgaatcaacttcaaatttaaataccttggaaacttgagcagcaattgatta 104  Q
    ||||||| ||| || ||||  ||| ||||||| ||||||||| ||| ||| ||||||||||||  | |||||||  |||||||| ||||||| || ||||    
T  12133315 ttctgggctgtcataaaattcagtagatgtaatagtaccattacttgaatcaatcaacttcaatataaaatacccaggaaacttcagcagcactttatta 12133216  T
Q  105 tcctcaaaaatatatattggctcaccaaatacactatatataggatctcccctgtaagaaacattgaacaatttagtccacgactctctatttccatact 204  Q
    |||||||||||||||| ||||||||||| |||||||  ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  12133215 tcctcaaaaatatataatggctcaccaattacactaagtataggatctcccctataagaaacattgaacaatttagtccacgactctctatttccatact 12133116  T
Q  205 ccttcataacccaaac 220  Q
    || |||||||||||||    
T  12133115 ccctcataacccaaac 12133100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 148 - 220
Target Start/End: Complemental strand, 2442114 - 2442042
Alignment:
Q  148 gatctcccctgtaagaaacattgaacaatttagtccacgactctctatttccatactccttcataacccaaac 220  Q
    ||||| ||||| |||||| | |||||||||||||||| || ||| ||||||||||||||||||||| ||||||    
T  2442114 gatctaccctgcaagaaagagtgaacaatttagtccaagaatctttatttccatactccttcataatccaaac 2442042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 146 - 220
Target Start/End: Original strand, 4142108 - 4142182
Alignment:
Q  146 aggatctcccctgtaagaaacattgaacaatttagtccacgactctctatttccatactccttcataacccaaac 220  Q
    |||||||| | |||||| || | |||||||||||||||| |||||| |||||||||| |||||||||| ||||||    
T  4142108 aggatctctcatgtaaggaatagtgaacaatttagtccaagactctttatttccatattccttcataagccaaac 4142182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 147 - 220
Target Start/End: Original strand, 2696707 - 2696780
Alignment:
Q  147 ggatctcccctgtaagaaacattgaacaatttagtccacgactctctatttccatactccttcataacccaaac 220  Q
    |||||| || ||||||| ||| ||||||||||| |||| |||||| |||||||||| |||||||||| ||||||    
T  2696707 ggatcttccatgtaagatacagtgaacaatttaatccaagactctttatttccatattccttcataatccaaac 2696780  T

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Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 171 - 220
Target Start/End: Complemental strand, 3754652 - 3754603
Alignment:
Q  171 aacaatttagtccacgactctctatttccatactccttcataacccaaac 220  Q
    |||||||||||||| |||||| |||||||||| |||||||||||||||||    
T  3754652 aacaatttagtccaagactctttatttccatattccttcataacccaaac 3754603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 172 - 220
Target Start/End: Complemental strand, 2492133 - 2492085
Alignment:
Q  172 acaatttagtccacgactctctatttccatactccttcataacccaaac 220  Q
    ||||||||||||| ||||||| |||||||||||||||||||| ||||||    
T  2492133 acaatttagtccaagactctcgatttccatactccttcataatccaaac 2492085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 148 - 220
Target Start/End: Complemental strand, 7942560 - 7942488
Alignment:
Q  148 gatctcccctgtaagaaacattgaacaatttagtccacgactctctatttccatactccttcataacccaaac 220  Q
    ||||| || |||||| ||||||| |||||||| |||| |||||| |||| |||||||||||||||| ||||||    
T  7942560 gatcttccatgtaaggaacattgtacaatttaatccaagactctttattaccatactccttcataatccaaac 7942488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 157 - 220
Target Start/End: Complemental strand, 989462 - 989399
Alignment:
Q  157 tgtaagaaacattgaacaatttagtccacgactctctatttccatactccttcataacccaaac 220  Q
    ||||||||| | |||||||||||||||| |||||| ||||||| ||||| ||||| ||||||||    
T  989462 tgtaagaaatagtgaacaatttagtccaagactctttatttccgtactctttcattacccaaac 989399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 169 - 220
Target Start/End: Original strand, 4157941 - 4157992
Alignment:
Q  169 tgaacaatttagtccacgactctctatttccatactccttcataacccaaac 220  Q
    |||||||||||||||| |||||| |||||||||| |||||||||| ||||||    
T  4157941 tgaacaatttagtccaagactctttatttccatattccttcataagccaaac 4157992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 158 - 220
Target Start/End: Original strand, 9608330 - 9608392
Alignment:
Q  158 gtaagaaacattgaacaatttagtccacgactctctatttccatactccttcataacccaaac 220  Q
    |||||||||| || | ||||||||||| || ||| |||||||||| |||||||||||||||||    
T  9608330 gtaagaaacactgtataatttagtccaagaatctatatttccatattccttcataacccaaac 9608392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 159 - 220
Target Start/End: Complemental strand, 968735 - 968674
Alignment:
Q  159 taagaaacattgaacaatttagtccacgactctctatttccatactccttcataacccaaac 220  Q
    ||||||| | |||| ||||||||||| |||||| |||||||||  |||||||||||||||||    
T  968735 taagaaatagtgaataatttagtccatgactctttatttccatgttccttcataacccaaac 968674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 220
Target Start/End: Original strand, 771499 - 771547
Alignment:
Q  172 acaatttagtccacgactctctatttccatactccttcataacccaaac 220  Q
    ||||||||||||| || ||| |||||||||| |||||||||||||||||    
T  771499 acaatttagtccaagagtctgtatttccatattccttcataacccaaac 771547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 220
Target Start/End: Original strand, 1940567 - 1940627
Alignment:
Q  160 aagaaacattgaacaatttagtccacgactctctatttccatactccttcataacccaaac 220  Q
    |||||| | ||||||||||||||||||| |||  ||||||||  |||||||||||||||||    
T  1940567 aagaaatagtgaacaatttagtccacgagtcttgatttccatgttccttcataacccaaac 1940627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 220
Target Start/End: Complemental strand, 2456300 - 2456252
Alignment:
Q  172 acaatttagtccacgactctctatttccatactccttcataacccaaac 220  Q
    ||||||||||||| || ||| |||||||||| |||||||||||||||||    
T  2456300 acaatttagtccaagagtctttatttccatattccttcataacccaaac 2456252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 220
Target Start/End: Original strand, 2644362 - 2644410
Alignment:
Q  172 acaatttagtccacgactctctatttccatactccttcataacccaaac 220  Q
    ||||||||||||| ||||||  |||||||||||||||||||| ||||||    
T  2644362 acaatttagtccaagactcttgatttccatactccttcataatccaaac 2644410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 220
Target Start/End: Original strand, 2659152 - 2659200
Alignment:
Q  172 acaatttagtccacgactctctatttccatactccttcataacccaaac 220  Q
    ||||||||||||| ||||||  |||||||||||||||||||| ||||||    
T  2659152 acaatttagtccaagactcttgatttccatactccttcataatccaaac 2659200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 220
Target Start/End: Complemental strand, 13498303 - 13498227
Alignment:
Q  144 ataggatctcccctgtaagaaacattgaacaatttagtccacgactctctatttccatactccttcataacccaaac 220  Q
    |||||| ||||| | ||||| | |||| | ||||||||||| |||||| |||||||||| |||||||||| ||||||    
T  13498303 ataggaactcccatataagagatattgtataatttagtccaagactctttatttccatattccttcataatccaaac 13498227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 220
Target Start/End: Original strand, 803215 - 803266
Alignment:
Q  169 tgaacaatttagtccacgactctctatttccatactccttcataacccaaac 220  Q
    ||||||| |||||||| |||||| |||||||||| || ||||||||||||||    
T  803215 tgaacaacttagtccaagactctttatttccatattctttcataacccaaac 803266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 220
Target Start/End: Complemental strand, 1007515 - 1007464
Alignment:
Q  169 tgaacaatttagtccacgactctctatttccatactccttcataacccaaac 220  Q
    |||||||||||||||| |||||  |||||||||| |||||||| ||||||||    
T  1007515 tgaacaatttagtccaggactcgttatttccatattccttcattacccaaac 1007464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 220
Target Start/End: Complemental strand, 1022543 - 1022492
Alignment:
Q  169 tgaacaatttagtccacgactctctatttccatactccttcataacccaaac 220  Q
    |||||||||||||||| |||||  |||||||||| |||||||| ||||||||    
T  1022543 tgaacaatttagtccatgactcgttatttccatattccttcattacccaaac 1022492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 220
Target Start/End: Original strand, 1931139 - 1931202
Alignment:
Q  157 tgtaagaaacattgaacaatttagtccacgactctctatttccatactccttcataacccaaac 220  Q
    ||||||||| | |||||||||||||||| || ||| |||||||||  ||| |||||||||||||    
T  1931139 tgtaagaaatagtgaacaatttagtccaggagtctttatttccatgttccatcataacccaaac 1931202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 212
Target Start/End: Original strand, 7432051 - 7432094
Alignment:
Q  169 tgaacaatttagtccacgactctctatttccatactccttcata 212  Q
    ||||||||||||||||||| ||| |||||||||| |||||||||    
T  7432051 tgaacaatttagtccacgattctttatttccatattccttcata 7432094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 220
Target Start/End: Original strand, 754609 - 754657
Alignment:
Q  172 acaatttagtccacgactctctatttccatactccttcataacccaaac 220  Q
    ||||||||||||| ||||||  || ||||||||||||||||| ||||||    
T  754609 acaatttagtccaagactcttgatctccatactccttcataatccaaac 754657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 220
Target Start/End: Original strand, 768321 - 768377
Alignment:
Q  164 aacattgaacaatttagtccacgactctctatttccatactccttcataacccaaac 220  Q
    ||||| ||||||||||||||| ||||||  |||||| ||||| ||||||| ||||||    
T  768321 aacatggaacaatttagtccaagactcttcatttccgtactcattcataatccaaac 768377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 220
Target Start/End: Original strand, 783775 - 783847
Alignment:
Q  148 gatctcccctgtaagaaacattgaacaatttagtccacgactctctatttccatactccttcataacccaaac 220  Q
    |||||||| |||||| |||| |  ||||||||||||| | || | |||||||||| |||||||||| ||||||    
T  783775 gatctcccatgtaaggaacagtatacaatttagtccatggctttgtatttccatattccttcataatccaaac 783847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 220
Target Start/End: Original strand, 1891040 - 1891112
Alignment:
Q  148 gatctcccctgtaagaaacattgaacaatttagtccacgactctctatttccatactccttcataacccaaac 220  Q
    |||||| | ||||||||||| |  ||||||||||||| || ||| |||||||||  |||||||||| ||||||    
T  1891040 gatctcgcatgtaagaaacactatacaatttagtccaagagtctttatttccatgttccttcataatccaaac 1891112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 220
Target Start/End: Complemental strand, 2631408 - 2631360
Alignment:
Q  172 acaatttagtccacgactctctatttccatactccttcataacccaaac 220  Q
    ||||||||||||| ||||||  ||||||||| |||||||||| ||||||    
T  2631408 acaatttagtccaagactcttgatttccatattccttcataatccaaac 2631360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 220
Target Start/End: Original strand, 7324431 - 7324479
Alignment:
Q  172 acaatttagtccacgactctctatttccatactccttcataacccaaac 220  Q
    ||||||||||||| |||||| ||||||| || |||||||||| ||||||    
T  7324431 acaatttagtccaagactctttatttccgtagtccttcataatccaaac 7324479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 220
Target Start/End: Original strand, 7398163 - 7398227
Alignment:
Q  156 ctgtaagaaacattgaacaatttagtccacgactctctatttccatactccttcataacccaaac 220  Q
    ||||||||||||   ||||||||| |||| ||||||  |||||||||||||||||| | ||||||    
T  7398163 ctgtaagaaacacaaaacaatttaatccaagactcttcatttccatactccttcatcaaccaaac 7398227  T

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Target: scaffold0044 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 148 - 219
Target Start/End: Complemental strand, 89218 - 89147
Alignment:
Q  148 gatctcccctgtaagaaacattgaacaatttagtccacgactctctatttccatactccttcataacccaaa 219  Q
    ||||| || |||||| ||||||| ||||||||||||| |||||| |||||||||| ||||||||||||||||    
T  89218 gatcttccatgtaaggaacattgtacaatttagtccaagactctttatttccatattccttcataacccaaa 89147  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 146 - 220
Target Start/End: Complemental strand, 11081890 - 11081816
Alignment:
Q  146 aggatctcccctgtaagaaacattgaacaatttagtccacgactctctatttccatactccttcataacccaaac 220  Q
    |||||||| | |||||| || | | |||||||||||||| |||||| ||||||||||||||||||||||||||||    
T  11081890 aggatctctcatgtaaggaatagtaaacaatttagtccaagactctttatttccatactccttcataacccaaac 11081816  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 220
Target Start/End: Original strand, 1427690 - 1427741
Alignment:
Q  169 tgaacaatttagtccacgactctctatttccatactccttcataacccaaac 220  Q
    |||||| |||| |||| |||||| ||||||||||||| ||||||||||||||    
T  1427690 tgaacagtttaatccaagactctgtatttccatactctttcataacccaaac 1427741  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 220
Target Start/End: Original strand, 23766859 - 23766910
Alignment:
Q  169 tgaacaatttagtccacgactctctatttccatactccttcataacccaaac 220  Q
    |||||||||||||||| |||||| |||||||||| || ||||||| ||||||    
T  23766859 tgaacaatttagtccaagactctttatttccatattctttcataatccaaac 23766910  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 220
Target Start/End: Original strand, 23816707 - 23816758
Alignment:
Q  169 tgaacaatttagtccacgactctctatttccatactccttcataacccaaac 220  Q
    |||||||||||||||| |||||| |||||||||| || ||||||| ||||||    
T  23816707 tgaacaatttagtccaagactctttatttccatattctttcataatccaaac 23816758  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 160 - 222
Target Start/End: Original strand, 370773 - 370835
Alignment:
Q  160 aagaaacattgaacaatttagtccacgactctctatttccatactccttcataacccaaacgc 222  Q
    |||||| |||||||||||||||||| || ||| |||||||||| | |||||||||||||||||    
T  370773 aagaaatattgaacaatttagtccaagaatctttatttccataattcttcataacccaaacgc 370835  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 217
Target Start/End: Original strand, 1442100 - 1442153
Alignment:
Q  164 aacattgaacaatttagtccacgactctctatttccatactccttcataaccca 217  Q
    |||| |||||||||||||||| || ||| || ||||||| ||||||||||||||    
T  1442100 aacagtgaacaatttagtccaagaatctttaattccataatccttcataaccca 1442153  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 219
Target Start/End: Original strand, 9819831 - 9819876
Alignment:
Q  174 aatttagtccacgactctctatttccatactccttcataacccaaa 219  Q
    ||||||||||| || |||||||||||||| |||||||||| |||||    
T  9819831 aatttagtccaagagtctctatttccatattccttcataagccaaa 9819876  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 151 - 213
Target Start/End: Complemental strand, 6538906 - 6538844
Alignment:
Q  151 ctcccctgtaagaaacattgaacaatttagtccacgactctctatttccatactccttcataa 213  Q
    ||||| ||| ||||||| |||||||||||||||| || ||| |||||||||||||||||||||    
T  6538906 ctcccatgttagaaacactgaacaatttagtccaagaatctttatttccatactccttcataa 6538844  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 149 - 220
Target Start/End: Original strand, 7156169 - 7156240
Alignment:
Q  149 atctcccctgtaagaaacattgaacaatttagtccacgactctctatttccatactccttcataacccaaac 220  Q
    ||||||| |||||| ||||  ||||||||||| ||| || |||  |||||||||||||||||||| ||||||    
T  7156169 atctcccatgtaaggaacacggaacaatttagcccaagaatcttcatttccatactccttcataagccaaac 7156240  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 220
Target Start/End: Complemental strand, 11237759 - 11237696
Alignment:
Q  157 tgtaagaaacattgaacaatttagtccacgactctctatttccatactccttcataacccaaac 220  Q
    |||||| ||||  ||||||||||||||| |  ||||||||||||||||||| ||||| ||||||    
T  11237759 tgtaaggaacacggaacaatttagtccaagtttctctatttccatactcctccataagccaaac 11237696  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 220
Target Start/End: Original strand, 7160752 - 7160802
Alignment:
Q  170 gaacaatttagtccacgactctctatttccatactccttcataacccaaac 220  Q
    ||||||||||||||| || ||  ||||||||||||||||||||| ||||||    
T  7160752 gaacaatttagtccaagaatcattatttccatactccttcataagccaaac 7160802  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 221
Target Start/End: Original strand, 7168667 - 7168739
Alignment:
Q  149 atctcccctgtaagaaacattgaacaatttagtccacgactctctatttccatactccttcataacccaaacg 221  Q
    ||||||| |||||| |||   ||||||||||||||| || ||  |||||||||| |||||||||| |||||||    
T  7168667 atctcccatgtaaggaactcggaacaatttagtccaagaatcgttatttccatattccttcataagccaaacg 7168739  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 221
Target Start/End: Original strand, 22672112 - 22672176
Alignment:
Q  157 tgtaagaaacattgaacaatttagtccacgactctctatttccatactccttcataacccaaacg 221  Q
    ||||||||| | |||||||||||||||| || ||  |||||||||| |||||||| |||||||||    
T  22672112 tgtaagaaatagtgaacaatttagtccaagattccttatttccatattccttcattacccaaacg 22672176  T

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