View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11386A_low_479 (Length: 228)
Name: NF11386A_low_479
Description: NF11386A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11386A_low_479 |
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| [»] chr7 (2 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 7 - 228
Target Start/End: Complemental strand, 353785 - 353564
Alignment:
| Q |
7 |
tctattatatttagaaacatacatacatataaagtttattcataagaaattcaattttctcaacagcttgatacgtatttttctgtttgacttaatccaa |
106 |
Q |
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| T |
353785 |
tctattatatttagaaacatacatacatataaagtttattcataagaaattcaattttctcaacagcttgatacatatttttctgtttgacttaatccaa |
353686 |
T |
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| Q |
107 |
gagcaaacggcaagttttgtatctaggcatgatatcctgatcaaccatctcctcgaacagattgaatgcccacttgcatttatctgctctgcagagccca |
206 |
Q |
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| T |
353685 |
gagcaaacggcaagttttgtatctaggcatgatatcctgatcaaccatctcctcgaacagattgaatgcccacttgcatctatctgctctgcagagccca |
353586 |
T |
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| Q |
207 |
tgaattagcaatgtataggttg |
228 |
Q |
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|||||||||||||||||||||| |
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| T |
353585 |
tgaattagcaatgtataggttg |
353564 |
T |
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Target: chr7; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 36 - 228
Target Start/End: Complemental strand, 10580533 - 10580341
Alignment:
| Q |
36 |
taaagtttattcataagaaattcaattttctcaacagcttgatacgtatttttctgtttgacttaatccaagagcaaacggcaagttttgtatctaggca |
135 |
Q |
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|||||||| |||||||||| |||||||| ||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
10580533 |
taaagtttcttcataagaacatcaattttgtcaacagcttgatacatatttttctgtttgacttcatccaagagcaaacggcaagttttgtatctaggca |
10580434 |
T |
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| Q |
136 |
tgatatcctgatcaaccatctcctcgaacagattgaatgcccacttgcatttatctgctctgcagagcccatgaattagcaatgtataggttg |
228 |
Q |
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| T |
10580433 |
cgatatcttgatcaaccatctcctcgaacagatcgaatgcccacttgcatctatctgctctgcaaagcccatgaattagcaatgaataggttg |
10580341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 31 - 228
Target Start/End: Complemental strand, 24578945 - 24578748
Alignment:
| Q |
31 |
acatataaagtttattcataagaaattcaattttctcaacagcttgatacgtatttttctgtttgacttaatccaagagcaaacggcaagttttgtatct |
130 |
Q |
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|||| |||||||| |||||||||| ||||||||| ||||||| ||| | |||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
24578945 |
acatttaaagtttcttcataagaacctcaattttcacaacagcgagatgcatatttttctgtttgacttcatccaagagcaaacggcaagttttgtatct |
24578846 |
T |
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| Q |
131 |
aggcatgatatcctgatcaaccatctcctcgaacagattgaatgcccacttgcatttatctgctctgcagagcccatgaattagcaatgtataggttg |
228 |
Q |
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||||| |||||| |||||| |||||||||||||||||| |||||||||||||||| ||||||||||| | |||||||||||||||||||||||||||| |
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| T |
24578845 |
aggcacgatatcttgatcagccatctcctcgaacagatcgaatgcccacttgcatctatctgctctgtaaagcccatgaattagcaatgtataggttg |
24578748 |
T |
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