View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11386A_low_482 (Length: 227)
Name: NF11386A_low_482
Description: NF11386A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11386A_low_482 |
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Alignment Details
Target: chr7 (Bit Score: 180; Significance: 2e-97; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 20 - 207
Target Start/End: Original strand, 12487632 - 12487819
Alignment:
| Q |
20 |
atggaaaattgacaatgcggtcttagtttgttttaaagtctgtcagtcaagttcaatacagtgttttcgaatgtcggccatggtggatattggtggctat |
119 |
Q |
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| T |
12487632 |
atggaaaattgacaatgtggtcttagtttgttttaaagtctgtcagtcaagttcaatacagtgttttcgaatgtcggccatggtgcatattggtggctat |
12487731 |
T |
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| Q |
120 |
ttttgggctcgcccccatggtaaatatcggctgatgttgtaggtttttccgccataatcctctatgacggcaccacagggcagccagt |
207 |
Q |
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| T |
12487732 |
ttttgggctcgcccccatggtaaatatcggctgatgttgtaggtttttccgccataatcctctatgacggcaccacagggcagccagt |
12487819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 20 - 166
Target Start/End: Original strand, 12541448 - 12541599
Alignment:
| Q |
20 |
atggaaaattgacaatgcggtcttagtttgttttaaagtctgtcagtcaagttcaat-----acagtgttttcgaatgtcggccatggtggatattggtg |
114 |
Q |
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| T |
12541448 |
atggaaaattgacaacgtggtcttagtttgttttaaagtctgtcagtcaagttcaatacaatacagtgttttcgaatgtcggccatggaggatatcggtg |
12541547 |
T |
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| Q |
115 |
gctatttttgggctcgcccccatggtaaatatcggctgatgttgtaggtttt |
166 |
Q |
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| T |
12541548 |
gcgatttttgggcttgccctctttgtaaatatcgactgacgttgtaggtttt |
12541599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 38 - 166
Target Start/End: Original strand, 12509274 - 12509402
Alignment:
| Q |
38 |
ggtcttagtttgttttaaagtctgtcagtcaagttcaatacagtgttttcgaatgtcggccatggtggatattggtggctatttttgggctcgcccccat |
137 |
Q |
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| T |
12509274 |
ggtcttattatgttttaaagtttgagagtcaagttcaatcctgtgttatcgaatatcggccatggaggatatcggtggcgatttttgggcttgccccctt |
12509373 |
T |
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| Q |
138 |
ggtaaatatcggctgatgttgtaggtttt |
166 |
Q |
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| T |
12509374 |
cgtagatatcgactgacgttgtaggtttt |
12509402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 106 - 186
Target Start/End: Complemental strand, 34498964 - 34498884
Alignment:
| Q |
106 |
atattggtggctatttttgggctcgcccccatggtaaatatcggctgatgttgtaggtttttccgccataatcctctatga |
186 |
Q |
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| T |
34498964 |
atatcggtggcggtttttgggctcgccgcaatggtaaatatcggtcgatattgcaggtctttccagcataatcctctatga |
34498884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 186
Target Start/End: Complemental strand, 27610489 - 27610409
Alignment:
| Q |
106 |
atattggtggctatttttgggctcgcccccatggtaaatatcggctgatgttgtaggtttttccgccataatcctctatga |
186 |
Q |
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| T |
27610489 |
atatcggtggcggtttttgggctcgccgcaatggtaaatatcggtcaatattgcaggtctttccagcataatcctctatga |
27610409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 196
Target Start/End: Complemental strand, 40554471 - 40554379
Alignment:
| Q |
104 |
ggatattggtggctatttttgggctcgcccccatggtaaatatcggctgatgttgtaggtttttccgccataatcctctatgacggcaccaca |
196 |
Q |
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| T |
40554471 |
ggatatcggtggcaatttttgggctctccgccatgcccaatttcggctgatatggcaggattttccgccatgatccgatatgacggcgccaca |
40554379 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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