View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11386A_low_483 (Length: 227)
Name: NF11386A_low_483
Description: NF11386A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11386A_low_483 |
 | |
|
| [»] scaffold0328 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0328 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: scaffold0328
Description:
Target: scaffold0328; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 18 - 212
Target Start/End: Original strand, 13270 - 13464
Alignment:
| Q |
18 |
attaattacctctgattcaagttcctcatgaagaacagcaaatagttgaaaaccaagtgaatcaaatatgggttttctggaataaagctggtgtgcctca |
117 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13270 |
attaattacctctgattcaatttcctcatgaagaactgcaaatagttgaaaaccaagtgaatcaaatatgggttttctggaataaagctggtgtgcctca |
13369 |
T |
|
| Q |
118 |
gctctacacatgatgcacctgttttaaaattcaagggacataaatagcagcaagcaacccactttactttcaaatcaagagatataaaacaccat |
212 |
Q |
| |
|
||||||||||||||||||||||||| |||| ||||||| ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
13370 |
gctctacacatgatgcacctgttttcaaatacaagggaaataaatagcagcaagaaacccactctactttcaaatcaagagatataaaacaccat |
13464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 42 - 141
Target Start/End: Original strand, 27336830 - 27336929
Alignment:
| Q |
42 |
ctcatgaagaacagcaaatagttgaaaaccaagtgaatcaaatatgggttttctggaataaagctggtgtgcctcagctctacacatgatgcacctgttt |
141 |
Q |
| |
|
|||||||| |||| |||||||||||| ||||||| ||||||||||||||| ||||| | |||| ||||||||| ||||| |||||||||||||||||| |
|
|
| T |
27336830 |
ctcatgaacaacaacaaatagttgaaccccaagtgcatcaaatatgggtttcctggagaagagcttgtgtgcctctgctctgcacatgatgcacctgttt |
27336929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 42 - 141
Target Start/End: Complemental strand, 29176941 - 29176842
Alignment:
| Q |
42 |
ctcatgaagaacagcaaatagttgaaaaccaagtgaatcaaatatgggttttctggaataaagctggtgtgcctcagctctacacatgatgcacctgttt |
141 |
Q |
| |
|
|||||||| |||| |||||||||||| ||||||| ||||||||||||||| ||||| | |||| ||||||||| ||||| |||||||||||||||||| |
|
|
| T |
29176941 |
ctcatgaacaacaacaaatagttgaaccccaagtgcatcaaatatgggtttcctggagaagagcttgtgtgcctctgctctgcacatgatgcacctgttt |
29176842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University