View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11386A_low_484 (Length: 227)
Name: NF11386A_low_484
Description: NF11386A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11386A_low_484 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 5 - 227
Target Start/End: Complemental strand, 6758173 - 6757951
Alignment:
| Q |
5 |
catcaacagatccagcattttctaagaaagcactgccttcttgtttaagtctacgtaataatgttaaagggggtcctttttcattaataaaagttccaat |
104 |
Q |
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| T |
6758173 |
catcaacagatccagcattttctaagaaagcactgccttcttgtttaagtctacgtaataatgttaaagagtgtcctttttcattagtaaaagttccaat |
6758074 |
T |
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| Q |
105 |
tctgtccgctgtctcggaagttaatcctttctcttccacctacagcacggaaggcagtgcgaaccaaattagtaaacataggaaatcatggcattacaaa |
204 |
Q |
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| T |
6758073 |
tctgtccgctgtctcggaagttaatcccttctcttccacctacagcatggaaggcagtacaaaccaaattagtaaacataagaaatcatgacattacaaa |
6757974 |
T |
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| Q |
205 |
aaatagcttcctgatattagcag |
227 |
Q |
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| T |
6757973 |
aaatagcttcctgatattagcag |
6757951 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 5 - 192
Target Start/End: Original strand, 25464881 - 25465068
Alignment:
| Q |
5 |
catcaacagatccagcattttctaagaaagcactgccttcttgtttaagtctacgtaataatgttaaagggggtcctttttcattaataaaagttccaat |
104 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||| ||||||| || |||| |||||||||||| |
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| T |
25464881 |
catcaacagatccagcattttctaagaaagcactgccttcttgtttaagtttcgataacaatgttaaaggatgtcctttctctttaacaaaagttccaat |
25464980 |
T |
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| Q |
105 |
tctgtccgctgtctcggaagttaatcctttctcttccacctacagcacggaaggcagtgcgaaccaaattagtaaacataggaaatca |
192 |
Q |
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| T |
25464981 |
tctgtcagctgtctcagcagttaatcctttctcttccacctacagcatgaaagtcagtaaaaaccacattattaaagataagaaatca |
25465068 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 5 - 151
Target Start/End: Original strand, 25475614 - 25475761
Alignment:
| Q |
5 |
catcaacagatccagcatttt-ctaagaaagcactgccttcttgtttaagtctacgtaataatgttaaagggggtcctttttcattaataaaagttccaa |
103 |
Q |
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| T |
25475614 |
catcaacagatccagcatttttctaagaaagcactgccttcttgtttaagcttctctaacaacgttaaaggatgtcctttctctctaacaaaagttccaa |
25475713 |
T |
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| Q |
104 |
ttctgtccgctgtctcggaagttaatcctttctcttccacctacagca |
151 |
Q |
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| T |
25475714 |
ttctgtcagctgtctcaacagttaatcctttctcttccacctacagca |
25475761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 82; Significance: 7e-39; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 5 - 219
Target Start/End: Original strand, 40087292 - 40087497
Alignment:
| Q |
5 |
catcaacagatccagcattttctaagaaagcactgccttcttgtttaagtctacgtaataatgttaaagggggtcctttttcattaataaaagttccaat |
104 |
Q |
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|||||||||||||||||||||||||||||| ||||| |||||||| ||| | ||||| |||||||||| |||||||||| |||| ||||||||| || |
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| T |
40087292 |
catcaacagatccagcattttctaagaaaggactgctatcttgtttcagttttgataatactgttaaagggtgtcctttttctttaacaaaagttccgat |
40087391 |
T |
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| Q |
105 |
tctgtccgctgtctcggaagttaatcctttctcttccacctacagcacggaaggcagtgcgaaccaaattagtaaacataggaaatcatggcattacaaa |
204 |
Q |
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| T |
40087392 |
tctgtcagctgtctcggcacttaatcctttctcttccacctacaacataaaagtcagtacaaaccacatt-----aca----aaatcatggcattacaaa |
40087482 |
T |
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| Q |
205 |
aaatagcttcctgat |
219 |
Q |
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| T |
40087483 |
aaatagcttcctgat |
40087497 |
T |
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