View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11386A_low_489 (Length: 226)

Name: NF11386A_low_489
Description: NF11386A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11386A_low_489
NF11386A_low_489
[»] chr1 (12 HSPs)
chr1 (8-153)||(13244106-13244251)
chr1 (158-226)||(13244450-13244518)
chr1 (152-226)||(13080788-13080862)
chr1 (84-153)||(12963575-12963644)
chr1 (150-206)||(19279089-19279145)
chr1 (79-146)||(19278827-19278894)
chr1 (157-216)||(13094604-13094663)
chr1 (157-216)||(13130033-13130092)
chr1 (151-216)||(12963797-12963862)
chr1 (157-206)||(13161736-13161785)
chr1 (8-88)||(19278729-19278809)
chr1 (157-216)||(13101205-13101264)


Alignment Details
Target: chr1 (Bit Score: 110; Significance: 1e-55; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 8 - 153
Target Start/End: Original strand, 13244106 - 13244251
Alignment:
Q  8 agagatgaagggcaaggcagcaaaagaaaatcttcaccacttcttggacaaatgtataactgagtacaaaggaaatgaagatgtagatgaatctcgttat 107  Q
    ||||| ||||||||||||||| | ||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  13244106 agagaagaagggcaaggcagctagagaaaatcttcaccaattcttggagaaatgtataactgattacaaaggaaatgaagatgtagatgaatctcgttat 13244205  T
Q  108 tgcctgctaaaagaactaatgaaagaaggattgggaaagagggaaa 153  Q
    ||||||||||||||||||||||| ||| ||||||||||| ||||||    
T  13244206 tgcctgctaaaagaactaatgaaggaaagattgggaaagggggaaa 13244251  T

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Target: chr1; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 158 - 226
Target Start/End: Original strand, 13244450 - 13244518
Alignment:
Q  158 ttgataagcttgtttaccttcatggagccatatgtgaaaccttaaggctatttcctcctctggcatttc 226  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||    
T  13244450 ttgataagcttgtttaccttcatggagccatatgtgaaaccttgaggctatatcctcctctggcatttc 13244518  T

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Target: chr1; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 152 - 226
Target Start/End: Original strand, 13080788 - 13080862
Alignment:
Q  152 aagagcttgataagcttgtttaccttcatggagccatatgtgaaaccttaaggctatttcctcctctggcatttc 226  Q
    |||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |||| || | |||||||    
T  13080788 aagagcttgataagctagtttaccttcatggagccatatgtgaagccttaaggctatatccttctgtagcatttc 13080862  T

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Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 84 - 153
Target Start/End: Original strand, 12963575 - 12963644
Alignment:
Q  84 gaagatgtagatgaatctcgttattgcctgctaaaagaactaatgaaagaaggattgggaaagagggaaa 153  Q
    ||||| || |||||||||| || ||||||||||||||| |||||||| ||||||||||||||| ||||||    
T  12963575 gaagacgtggatgaatctcattcttgcctgctaaaagatctaatgaaggaaggattgggaaagggggaaa 12963644  T

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Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 150 - 206
Target Start/End: Original strand, 19279089 - 19279145
Alignment:
Q  150 gaaagagcttgataagcttgtttaccttcatggagccatatgtgaaaccttaaggct 206  Q
    |||||||||||||||||| ||||| ||||||||||| ||||||||| ||||||||||    
T  19279089 gaaagagcttgataagctagtttatcttcatggagctatatgtgaagccttaaggct 19279145  T

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Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 79 - 146
Target Start/End: Original strand, 19278827 - 19278894
Alignment:
Q  79 gaaatgaagatgtagatgaatctcgttattgcctgctaaaagaactaatgaaagaaggattgggaaag 146  Q
    |||||||||| |  |||||||||| |||||||||| |||||||||||||||| ||| |||||||||||    
T  19278827 gaaatgaagacgcggatgaatctcattattgcctggtaaaagaactaatgaaggaaagattgggaaag 19278894  T

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Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 157 - 216
Target Start/End: Complemental strand, 13094663 - 13094604
Alignment:
Q  157 cttgataagcttgtttaccttcatggagccatatgtgaaaccttaaggctatttcctcct 216  Q
    ||||||||||| || ||||| |||||||| |||||||||||||||||||| | |||||||    
T  13094663 cttgataagctagtatacctccatggagctatatgtgaaaccttaaggctttatcctcct 13094604  T

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Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 157 - 216
Target Start/End: Complemental strand, 13130092 - 13130033
Alignment:
Q  157 cttgataagcttgtttaccttcatggagccatatgtgaaaccttaaggctatttcctcct 216  Q
    ||||||||||| || ||||| |||||||| |||||||||||||||||||| | |||||||    
T  13130092 cttgataagctagtatacctccatggagctatatgtgaaaccttaaggctttatcctcct 13130033  T

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Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 151 - 216
Target Start/End: Original strand, 12963797 - 12963862
Alignment:
Q  151 aaagagcttgataagcttgtttaccttcatggagccatatgtgaaaccttaaggctatttcctcct 216  Q
    |||| |||||||||||||||||| ||||||||||| || |||||| | |||||||| | |||||||    
T  12963797 aaagggcttgataagcttgtttatcttcatggagctatttgtgaagctttaaggctttatcctcct 12963862  T

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Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 157 - 206
Target Start/End: Complemental strand, 13161785 - 13161736
Alignment:
Q  157 cttgataagcttgtttaccttcatggagccatatgtgaaaccttaaggct 206  Q
    ||||||||||| || ||||| |||||||| ||||||||||||||||||||    
T  13161785 cttgataagctagtatacctccatggagctatatgtgaaaccttaaggct 13161736  T

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Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 88
Target Start/End: Original strand, 19278729 - 19278809
Alignment:
Q  8 agagatgaagggcaaggcagcaaaagaaaatcttcaccacttcttggacaaatgtataactgagtacaaaggaaatgaaga 88  Q
    ||||| |||||||| || ||| ||||||||||||||| | |||||| ||||||||||| || | ||||||||  |||||||    
T  19278729 agagaagaagggcacggtagctaaagaaaatcttcacgaattcttgaacaaatgtatatcttattacaaaggtgatgaaga 19278809  T

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Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 216
Target Start/End: Complemental strand, 13101264 - 13101205
Alignment:
Q  157 cttgataagcttgtttaccttcatggagccatatgtgaaaccttaaggctatttcctcct 216  Q
    ||||||||||| || ||||| |||||||| |||||||||||||| ||||| | |||||||    
T  13101264 cttgataagctagtgtacctccatggagctatatgtgaaaccttgaggctttatcctcct 13101205  T

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