View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11386A_low_49 (Length: 416)
Name: NF11386A_low_49
Description: NF11386A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11386A_low_49 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 371; Significance: 0; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 22 - 412
Target Start/End: Original strand, 32912537 - 32912927
Alignment:
| Q |
22 |
tctggggctaactttaatggatgcaaaaagataattcgtaaggcacttaaattgaactatccatgtccctatcaaaattgcacttttggtggaatttgga |
121 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32912537 |
tctggggctaattttaatggatgcaaaaagataattcgtaaggcacttaaattgaactatccatgtccctatcaaaattgcacttttggtggaatttgga |
32912636 |
T |
|
| Q |
122 |
atggcggagggggaaatggacagaaacacctttttgcttcttcatctttcttttacctacctgaagatgtatgtaatgtattattgttttcttttataaa |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32912637 |
atggcggagggggaaatggacagaaacacctttttgcttcttcatctttcttttacctacctgaagatgtatgtaatgtattattgttttcttttataaa |
32912736 |
T |
|
| Q |
222 |
ttcgatgctatttaattaagccttgctaattacattgtcaaattattattttaggttggtatggttaatccaaagacacctaatttcaaaattcgtcctg |
321 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
32912737 |
tttgatgctatttaattaagccttgctaattacattgtcaaattattattttaggttggtatggttgatccaaagacacctaatttcaaaattcgtcctg |
32912836 |
T |
|
| Q |
322 |
tggatctcgtgagtgaagctaagaaagcttgtgcattaaactttgaggatgccaaatccacttatccatatcttgctaagaataatatagc |
412 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |
|
|
| T |
32912837 |
tggatctcgtgagtgaagctaagaaagcttgtgcattaaactttgaggatgccaaatccacttatccatttcttgctaagaaaaatatagc |
32912927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 42 - 389
Target Start/End: Original strand, 32924530 - 32924885
Alignment:
| Q |
42 |
atgcaaaaagataattcgtaaggcacttaaattgaactatccatgtccctatcaaaattgcacttttggtggaatttggaatggcggagggggaaatgga |
141 |
Q |
| |
|
||||||||||||| ||||| |||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| ||| ||||| |||| |||| |
|
|
| T |
32924530 |
atgcaaaaagatagttcgtgaggctcttaaattgaattatccatgtccctatcagaattgcacttttggtggaatttggagtggtggaggaggaagtgga |
32924629 |
T |
|
| Q |
142 |
cagaaacacctttttgcttcttcatctttcttttacctacctgaagatgtatgtaatgtattattgt---tttcttt---tataaattcgatgctattta |
235 |
Q |
| |
|
|||| | ||||||||| |||||||||||||||||||| ||||||||||||||| ||||||||| ||| ||| || | || ||| | || | |
|
|
| T |
32924630 |
cagagaatactttttgctgcttcatctttcttttacctagctgaagatgtatgta--ttattattgttaatttatttcccaattattttgatagtgttca |
32924727 |
T |
|
| Q |
236 |
-----attaagccttgctaattacattgtcaaattattattttaggttggtatggttaatccaaagacacc---taatttcaaaattcgtcctgtggatc |
327 |
Q |
| |
|
|||||||||| ||||||||||||| |||||||||||| ||||| ||||| | ||||| ||||| || | ||| | ||||||||||||||| |
|
|
| T |
32924728 |
ttaacattaagcctttctaattacattgt----ttattattttagattggtttggttgacccaaatacaccttatagtctcacacttcgtcctgtggatc |
32924823 |
T |
|
| Q |
328 |
tcgtgagtgaagctaagaaagcttgtgcattaaactttgaggatgccaaatccacttatcca |
389 |
Q |
| |
|
| | || ||||||||||||||||||| ||||||| ||||||| |||||||| ||||||||| |
|
|
| T |
32924824 |
ttgagactgaagctaagaaagcttgtacattaaatcttgaggaggccaaatcaacttatcca |
32924885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 31 - 192
Target Start/End: Original strand, 32935523 - 32935684
Alignment:
| Q |
31 |
aactttaatggatgcaaaaagataattcgtaaggcacttaaattgaactatccatgtccctatcaaaattgcacttttggtggaatttggaatggcggag |
130 |
Q |
| |
|
|||||||||| ||||||| ||||||||| ||||| |||||| |||| |||||||||||||| | ||||||||| ||||||| |||||||| |||| |
|
|
| T |
32935523 |
aactttaatgaatgcaaagagataattcttaaggttcttaaagtgaatgatccatgtccctattcgagttgcactttcagtggaatatggaatggtggag |
32935622 |
T |
|
| Q |
131 |
ggggaaatggacagaaacacctttttgcttcttcatctttcttttacctacctgaagatgta |
192 |
Q |
| |
|
| || | |||||| || | ||||||| | ||||| ||||| ||||||| ||||||||||| |
|
|
| T |
32935623 |
gagggagtggacaaaagaaactttttgttacttcagctttcgcttacctaactgaagatgta |
32935684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 264 - 389
Target Start/End: Original strand, 32935764 - 32935889
Alignment:
| Q |
264 |
ttattattttaggttggtatggttaatccaaagacacctaatttcaaaattcgtcctgtggatctcgtgagtgaagctaagaaagcttgtgcattaaact |
363 |
Q |
| |
|
||||| |||||||||||||||||| | ||||| | |||||||| || | ||| ||| | ||| ||| | ||||||||| ||||||||||||||||| |
|
|
| T |
32935764 |
ttatttttttaggttggtatggttgagccaaataaacctaattccatacttcatccaatagatttcgaaattgaagctaaacgagcttgtgcattaaact |
32935863 |
T |
|
| Q |
364 |
ttgaggatgccaaatccacttatcca |
389 |
Q |
| |
|
||||||||| |||||||||||||||| |
|
|
| T |
32935864 |
ttgaggatgtcaaatccacttatcca |
32935889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 31 - 136
Target Start/End: Original strand, 32927261 - 32927366
Alignment:
| Q |
31 |
aactttaatggatgcaaaaagataattcgtaaggcacttaaattgaactatccatgtccctatcaaaattgcacttttggtggaatttggaatggcggag |
130 |
Q |
| |
|
|||||| ||| ||||||| |||||| || ||||| |||||| |||| |||||||||||||| ||||||||||||||||| || |||||||| |||| |
|
|
| T |
32927261 |
aactttgatgaatgcaaagagataactcttaaggttcttaaagtgaatgatccatgtccctattcgaattgcacttttggtgggatatggaatggtggag |
32927360 |
T |
|
| Q |
131 |
ggggaa |
136 |
Q |
| |
|
| |||| |
|
|
| T |
32927361 |
gaggaa |
32927366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 31 - 147
Target Start/End: Original strand, 32950186 - 32950302
Alignment:
| Q |
31 |
aactttaatggatgcaaaaagataattcgtaaggcacttaaattgaactatccatgtccctatcaaaattgcacttttggtggaatttggaatggcggag |
130 |
Q |
| |
|
|||||| ||| ||||||| ||||||||| ||||||||||||| |||| |||||||||| ||| ||| || | ||||||||| || ||||| || |||| |
|
|
| T |
32950186 |
aactttgatgaatgcaaagagataattcttaaggcacttaaagtgaatgatccatgtccttatggaaaatgtagttttggtgggatatggaacggtggag |
32950285 |
T |
|
| Q |
131 |
ggggaaatggacagaaa |
147 |
Q |
| |
|
| |||| ||| |||||| |
|
|
| T |
32950286 |
gaggaagtgggcagaaa |
32950302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 147
Target Start/End: Original strand, 32943005 - 32943121
Alignment:
| Q |
31 |
aactttaatggatgcaaaaagataattcgtaaggcacttaaattgaactatccatgtccctatcaaaattgcacttttggtggaatttggaatggcggag |
130 |
Q |
| |
|
|||||| ||| ||||||| ||||||||| ||||||||||||| |||| |||||||||| ||| || || | ||||||||| || ||||| || |||| |
|
|
| T |
32943005 |
aactttgatgaatgcaaagagataattcttaaggcacttaaagtgaatgatccatgtccttatgggaaatgtagttttggtgggatatggaacggtggag |
32943104 |
T |
|
| Q |
131 |
ggggaaatggacagaaa |
147 |
Q |
| |
|
| |||| ||| |||||| |
|
|
| T |
32943105 |
gaggaagtgggcagaaa |
32943121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 335 - 385
Target Start/End: Original strand, 32927656 - 32927706
Alignment:
| Q |
335 |
tgaagctaagaaagcttgtgcattaaactttgaggatgccaaatccactta |
385 |
Q |
| |
|
|||||||||| ||||||| |||||||||||||||||| ||||| |||||| |
|
|
| T |
32927656 |
tgaagctaagcgagcttgtacattaaactttgaggatgtcaaatacactta |
32927706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 162; Significance: 2e-86; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 42 - 412
Target Start/End: Original strand, 11824871 - 11825229
Alignment:
| Q |
42 |
atgcaaaaagataattcgtaaggcacttaaattgaactatccatgtccctatcaaaattgcacttttggtggaatttggaatggcggagggggaaatgga |
141 |
Q |
| |
|
||||||||||||| ||| | |||| ||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||| ||||| |||| |||| |
|
|
| T |
11824871 |
atgcaaaaagatagttcatcaggctcttaaattgaattatccatgtccttatcagaattgcacttttggtggaatttggaatggtggaggaggaagtgga |
11824970 |
T |
|
| Q |
142 |
cagaaacacctttttgcttcttcatctttcttttacctacctgaagatgtatgtaatgtattattgttttcttttataaattcgatgctatttaattaag |
241 |
Q |
| |
|
|||| | | ||||||||| |||||| ||||||||||||| ||| ||| ||||||| | | |||||||| ||||| ||| || ||| |||||| |
|
|
| T |
11824971 |
cagagaaaactttttgctgcttcatttttcttttacctagctgcagaagtatgtatt--aatattgtttcatttta---atta-attttatc--attaag |
11825062 |
T |
|
| Q |
242 |
ccttgctaattacattgtcaaattattattttaggttggtatggttaatccaaagacacctaatttcaaaattcgtcctgtggatctcgtgagtgaagct |
341 |
Q |
| |
|
|||| ||||||||||||| |||||||||||||||||||||||| ||||||| | |||||||||||||||||| ||||||||| ||| |||||||||| |
|
|
| T |
11825063 |
cctttctaattacattgt----ttattattttaggttggtatggttgatccaaataaacctaatttcaaaattcgacctgtggatttcgagagtgaagct |
11825158 |
T |
|
| Q |
342 |
aagaaagcttgtgcattaaactttgaggatgccaaatccacttatccatatcttgctaagaataatatagc |
412 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||| |||||||| |||||||||||| |||||||| |
|
|
| T |
11825159 |
aagaaagcttgtgcattaaattttgaggatgccaaatccagttatccatttcttgctaagaaaaatatagc |
11825229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University