View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11386A_low_490 (Length: 226)
Name: NF11386A_low_490
Description: NF11386A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11386A_low_490 |
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Alignment Details
Target: chr2 (Bit Score: 132; Significance: 1e-68; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 7820927 - 7821109
Alignment:
| Q |
1 |
atttatgttgatgaagtataaaataaaaaattatcctgattaaaaccaaagtttgctatatttagaaggattaaatgaataatgaagccttatttttatt |
100 |
Q |
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| T |
7820927 |
atttatgttgatgaagtataaaataaaaaattatcctgattaaaatcaaagtttgctatatttagaaggactgaatgaataatcaagccttatttttatt |
7821026 |
T |
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| Q |
101 |
actctaatttataataagcgacctatataacatttatccnnnnnnnnnatatgtaaaatagacagaaatttttcatgattgtc |
183 |
Q |
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| T |
7821027 |
actctaatttataataagcgacctatataacatttatcctttttttttttatgtaaaattgacagaaatttttcatgattgtc |
7821109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 5 - 139
Target Start/End: Original strand, 7810965 - 7811097
Alignment:
| Q |
5 |
atgttgatgaagtataaaataaaaaattatcctgattaaaaccaaagtttgctatatttagaaggattaaatgaataatgaagccttatttttattactc |
104 |
Q |
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| T |
7810965 |
atgttgatgaagta-aacacaaaaaattatcccgactaaaattaaagtttgct-tatttgcaaggactaaatgaataatcaaaccttatttttattactc |
7811062 |
T |
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| Q |
105 |
taatttataataagcgacctatataacatttatcc |
139 |
Q |
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| T |
7811063 |
taatttataatatgcgacctatatgacatttatcc |
7811097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 187 - 220
Target Start/End: Original strand, 7811161 - 7811194
Alignment:
| Q |
187 |
gaaggtaaggaagttaagttggaaatgaaggtag |
220 |
Q |
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| T |
7811161 |
gaaggtaaggaagttaagttggaaatgaaggtag |
7811194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 187 - 220
Target Start/End: Original strand, 7811357 - 7811390
Alignment:
| Q |
187 |
gaaggtaaggaagttaagttggaaatgaaggtag |
220 |
Q |
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| T |
7811357 |
gaaggtaaggaagttaagttggaaatgaaggtag |
7811390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 187 - 220
Target Start/End: Original strand, 7821129 - 7821162
Alignment:
| Q |
187 |
gaaggtaaggaagttaagttggaaatgaaggtag |
220 |
Q |
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| T |
7821129 |
gaaggtaaggaagttaagttggaaatgaaggtag |
7821162 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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