View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11386A_low_495 (Length: 225)
Name: NF11386A_low_495
Description: NF11386A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11386A_low_495 |
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Alignment Details
Target: chr3 (Bit Score: 182; Significance: 1e-98; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 20816512 - 20816291
Alignment:
| Q |
1 |
tcaacaccatagtctataccatcgatggtcaatgaagtttctgctatgtttgttgataccaaaatcatcctaccatgaaggcctccctctctaactggag |
100 |
Q |
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|||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||||||||||||||||||| |
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| T |
20816512 |
tcaacaacatagactataccattgatggtcaatgaagtttctgctatgtttgttgataccaaaatcttccttccaggaaggcctccctctctaactggag |
20816413 |
T |
|
| Q |
101 |
gtggagctggctcaaaaagcctgtgttgcatagccgggggaagagtagaatacaacggtacaactttcacagggcccaccgtgtccccccgaattgaaac |
200 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
20816412 |
gtggagctggctcaaaaatcctgtgttgcatagccgggggaagagtagaatacaacggtacaactttcacagggcccaccgtgtccccccgaattgcaac |
20816313 |
T |
|
| Q |
201 |
ttcattggatattcttcgacat |
222 |
Q |
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||||||||||||| | |||||| |
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| T |
20816312 |
ttcattggatattttgcgacat |
20816291 |
T |
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Target: chr1 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 8 - 189
Target Start/End: Original strand, 38779640 - 38779821
Alignment:
| Q |
8 |
catagtctataccatcgatggtcaatgaagtttctgctatgtttgttgataccaaaatcatcctaccatgaaggcctccctctctaactggaggtggagc |
107 |
Q |
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||||| |||||||||| || ||||| |||||||||||||||||||||||||||| |||| |||| ||| | |||||||||| |||||||||||||||| |
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| T |
38779640 |
catagactataccatcaattgtcaaggaagtttctgctatgtttgttgataccacaatcttccttccaggggggcctccctccttaactggaggtggagc |
38779739 |
T |
|
| Q |
108 |
tggctcaaaaagcctgtgttgcatagccgggggaagagtagaatacaacggtacaactttcacagggcccaccgtgtccccc |
189 |
Q |
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| T |
38779740 |
tggctcaaaaatcttctgttgcatagctgggggaagagtagaatataatggcacggctttcacagggcccacctggtccccc |
38779821 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 14 - 180
Target Start/End: Original strand, 33388605 - 33388771
Alignment:
| Q |
14 |
ctataccatcgatggtcaatgaagtttctgctatgtttgttgataccaaaatcatcctaccatgaaggcctccctctctaactggaggtggagctggctc |
113 |
Q |
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|||||||||| || ||||| |||||||||||||||||||||||||||| |||| | || ||| | ||||||||||| |||||||||| ||||||||||| |
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| T |
33388605 |
ctataccatcaatagtcaaagaagtttctgctatgtttgttgataccacaatctttcttccagggaggcctccctccttaactggaggcggagctggctc |
33388704 |
T |
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| Q |
114 |
aaaaagcctgtgttgcatagccgggggaagagtagaatacaacggtacaactttcacagggcccacc |
180 |
Q |
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||||| | | || |||||||| |||||||| |||||||||| | || |||||||||||||||||| |
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| T |
33388705 |
aaaaatcttctgctgcatagctgggggaagggtagaatacagtgataacactttcacagggcccacc |
33388771 |
T |
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