View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11386A_low_5 (Length: 578)
Name: NF11386A_low_5
Description: NF11386A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11386A_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 497; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 7 - 562
Target Start/End: Original strand, 52972298 - 52972850
Alignment:
| Q |
7 |
tgatcttcatgagtccatgggtgataactggtgcaggaggaggcaaacaagtttgaagttccaccataagagttatcagagagagacttggactaaggtg |
106 |
Q |
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| T |
52972298 |
tgatcttcatgagtccatgggtgataactggtgtaggaggaggcaaacaagtttgaagttccaccataagagttatcagagagagacttggactaaggtg |
52972397 |
T |
|
| Q |
107 |
ttgcagtgccttaacccagatggccttcatcaacaagggaacaaggtgtctaagcaggttttgagagagaggtttaagtgtttcaattccatgtttgaag |
206 |
Q |
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| T |
52972398 |
ttgcagtgccttaacccagatggccttcatcaacaagggaacaaggtctctaagcaggttttgagagagaggtttaagtgtttcaattccatgtttgaag |
52972497 |
T |
|
| Q |
207 |
atatccacaagacgcaaagtagttggatggtgagcgaggaacaacttcaatcagagttaagagtttcaatatctgccttggtcatacctgcgtatcgctc |
306 |
Q |
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| T |
52972498 |
atatccacaagacgcaaagtagttggatggtgagcgatgaacaacttcaatcagagttaagagtttcaatatctgccttggtcatacctgcgtatcgctc |
52972597 |
T |
|
| Q |
307 |
ctttatgggaagatttaaacatcatctagaaacaggaagacatattgacaagtacataaagtatcatcccgacgacattgagacattgattgacgannnn |
406 |
Q |
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| T |
52972598 |
ctttatgggaagatttaaacatcatctagaaacaggaagacatattgacaagtacataaagtatcatcccgacgacattgagacattgattgacgatttt |
52972697 |
T |
|
| Q |
407 |
nnngtcggaaatgttacgtccatgcctcgaaggaggacatgaaactcatcacttatttccttttatttttatgagatgagaatatgtcatcacactttat |
506 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
52972698 |
tttgttggaaatgttacgtccatgcctcgaaggaggacatgaaactcatcacttatttccttttattttcatgagatgagaatatgtcatcacactttat |
52972797 |
T |
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| Q |
507 |
atatacgtgtgtgtgtgagttgagtggagataaataccaccataccaccttagtta |
562 |
Q |
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| T |
52972798 |
atatatgtgtgtgtgtgagttgagtggagataaat---accataccaccttagtta |
52972850 |
T |
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