View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11386A_low_506 (Length: 221)
Name: NF11386A_low_506
Description: NF11386A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11386A_low_506 |
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Alignment Details
Target: chr5 (Bit Score: 175; Significance: 2e-94; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 22 - 200
Target Start/End: Complemental strand, 14397666 - 14397488
Alignment:
| Q |
22 |
agcctcaccttcaccttgagccttattatcatattctccatcgtcgccctcttctcgagaacactcctcaccattagtagattcacttcctgaaacaaca |
121 |
Q |
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| T |
14397666 |
agcctcaccttcaccttgagccttattatcatattctccatcgtcgcgctcttctcgagaacactcctcaccattagtagattcacttcctgaaacaaca |
14397567 |
T |
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| Q |
122 |
acattttcagaaccattttcattgtcctccgatgacctatgaggactttcttccccttcatcattaagatccatataat |
200 |
Q |
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| T |
14397566 |
acattttcagaaccattttcattgtcctccgatgacctatgaggactttcttccccttcatcattaagatccatataat |
14397488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 30 - 186
Target Start/End: Complemental strand, 14391371 - 14391215
Alignment:
| Q |
30 |
cttcaccttgagccttattatcatattctccatcgtcgccctcttctcgagaacactcctcaccattagtagattcacttcctgaaacaacaacattttc |
129 |
Q |
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| T |
14391371 |
cttcaccttcagccttattatcatgttctccatcg-cgtgctcttctcgagaacactactcaccatcattagattcgattccagaaacataaacattttt |
14391273 |
T |
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| Q |
130 |
agaaccattttcattgtcctccgatgacctatgaggactttct-tccccttcatcatt |
186 |
Q |
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| T |
14391272 |
agaacctttttcattgtcctcggatgacctatgaggactttctacccccttcatcatt |
14391215 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 26 - 185
Target Start/End: Original strand, 16024530 - 16024689
Alignment:
| Q |
26 |
tcaccttcaccttgagccttattatcatattctccatcgtcgccctcttctcgagaacactcctcaccattagtagattcacttcctgaaacaacaacat |
125 |
Q |
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| T |
16024530 |
tcaccttcactttcagccttatcatcatgttctccatcatcatgctcttcttgagagcactcctctccatcagcagattcacttccagaaacatcaacgt |
16024629 |
T |
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| Q |
126 |
tttcagaaccattttcattgtcctccgatgacctatgaggactttcttccccttcatcat |
185 |
Q |
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| T |
16024630 |
ttccagaagcgttttcactgccctctgatgacctctgaggactttcttccccttcatcat |
16024689 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 100 - 180
Target Start/End: Original strand, 13883931 - 13884011
Alignment:
| Q |
100 |
agattcacttcctgaaacaacaacattttcagaaccattttcattgtcctccgatgacctatgaggactttcttccccttc |
180 |
Q |
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| T |
13883931 |
agattcgcttccagaaacatcaacattttcagaagcattttaactatcctccgatgacctctgaggactctcttccccttc |
13884011 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 90 - 185
Target Start/End: Original strand, 13882112 - 13882207
Alignment:
| Q |
90 |
caccattagtagattcacttcctgaaacaacaacattttcagaaccattttcattgtcctccgatgacctatgaggactttcttccccttcatcat |
185 |
Q |
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| T |
13882112 |
caccatcaatagatttgcttccagaaacatcagcatttgcagaagtattttcgctgtcctccaatgacctctgaggactttcttccccttcatcat |
13882207 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 73 - 153
Target Start/End: Complemental strand, 14393117 - 14393037
Alignment:
| Q |
73 |
ttctcgagaacactcctcaccattagtagattcacttcctgaaacaacaacattttcagaaccattttcattgtcctccga |
153 |
Q |
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| T |
14393117 |
ttctcgagaacactcctcaccatctgtatattcgcttccaaaaacatcaacattttcaaaagcatttttactgtcctccga |
14393037 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 71 - 169
Target Start/End: Original strand, 26202120 - 26202218
Alignment:
| Q |
71 |
tcttctcgagaacactcctcaccattagtagattcacttcctgaaacaacaacattttcagaaccattttcattgtcctccgatgacctatgaggactt |
169 |
Q |
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| T |
26202120 |
tcttctcgagaacattcctcaccatcagcagactcagtaccagaaacatcaccattctcagatgcattttcactgtcgtctgatgatctatgaggactt |
26202218 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 169
Target Start/End: Original strand, 29625322 - 29625420
Alignment:
| Q |
71 |
tcttctcgagaacactcctcaccattagtagattcacttcctgaaacaacaacattttcagaaccattttcattgtcctccgatgacctatgaggactt |
169 |
Q |
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| T |
29625322 |
tcttctcgagaacattcctcaccatcagcagactcggtaccagaaacatcaccattctcagatgcattttcactgtcgtctgatgatctatgaggactt |
29625420 |
T |
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