View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11386A_low_509 (Length: 220)
Name: NF11386A_low_509
Description: NF11386A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11386A_low_509 |
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Alignment Details
Target: chr8 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 41311222 - 41311027
Alignment:
| Q |
1 |
atgataagactgaaaaggatgttattattgcctttgatttaaaggaaatgacactgtcagagactgctctcccagatggtttttatagtgattactctac |
100 |
Q |
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| T |
41311222 |
atgataagactgaaatggatgttattattgcctttgatttaaaggaaatgacactgtcagagactgctctcccagatggtttttatagtgattactctac |
41311123 |
T |
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| Q |
101 |
tagaatttatgatttgatggtatttggcagacttattagtgtatggaatatggagatgcctacacttaagatatgggtgatgcaagaatacacaat |
196 |
Q |
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| T |
41311122 |
tagaatttatgatttgatggtatttggcagacttattagtgtatggaatatggagatgcctacacttaagatatgggtgatgcaagaatacgcaat |
41311027 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 7 - 191
Target Start/End: Complemental strand, 43164894 - 43164710
Alignment:
| Q |
7 |
agactgaaaaggatgttattattgcctttgatttaaaggaaatgacactgtcagagactgctctcccagatggtttttatagtgattactctactagaat |
106 |
Q |
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| T |
43164894 |
agactgaaatagatgttattattgcctatgatttaaaggaaaagacaatgtcagagattgctcttccagatgatttttatagtgatttttctcccaacct |
43164795 |
T |
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| Q |
107 |
ttatgatttgatggtatttggcagacttattagtgtatggaatatggagatgcctacacttaagatatgggtgatgcaagaatac |
191 |
Q |
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| T |
43164794 |
ttatgatttgttggtacttcgcggacttatcagcgtatggaatatggagatgtctacacttaagatatgggtaatgcaagaatac |
43164710 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 7 - 191
Target Start/End: Original strand, 30165711 - 30165883
Alignment:
| Q |
7 |
agactgaaaaggatgttattattgcctttgatttaaaggaaatgacactgtcagagactgctctcccagatggtttttatagtgattactctactagaat |
106 |
Q |
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| T |
30165711 |
agactgaaatggatgttattattgcctttgatttaaaggaagcgacaatggcagagatagctcttccaaatgattgttctcgtg------------gaat |
30165798 |
T |
|
| Q |
107 |
ttatgatttgatggtatttggcagacttattagtgtatggaatatggagatgcctacacttaagatatgggtgatgcaagaatac |
191 |
Q |
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| T |
30165799 |
ttatgatttgttggtatttcatggacttatcagtgtatggaatgtggagaggtctacagttaagatatgggtgatgcaagaatac |
30165883 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 15 - 196
Target Start/End: Complemental strand, 30125162 - 30124981
Alignment:
| Q |
15 |
aaggatgttattattgcctttgatttaaaggaaatgacactgtcagagactgctctcccagatggtttttatagtgattactctactagaatttatgatt |
114 |
Q |
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| T |
30125162 |
aaggatgttattgttgcctttgatttaaaggaagcgacaatgtcagaaatagctcttccaaatgatttttataccgattactctcctgtagattatgatt |
30125063 |
T |
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| Q |
115 |
tgatggtatttggcagacttattagtgtatggaatatggagatgcctacacttaagatatgggtgatgcaagaatacacaat |
196 |
Q |
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|| | |||||||| ||||||| ||| |||||| | | |||||| | || |||||||| |||||||||| |||||| |||| |
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| T |
30125062 |
tgttagtatttggtggacttatcagtttatggattcttgagatggatgcagttaagatacgggtgatgcatgaatacgcaat |
30124981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 20 - 93
Target Start/End: Complemental strand, 28181038 - 28180965
Alignment:
| Q |
20 |
tgttattattgcctttgatttaaaggaaatgacactgtcagagactgctctcccagatggtttttatagtgatt |
93 |
Q |
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| T |
28181038 |
tgttattattgcctttgatttaaaggaaatgacaatgtcagatatagctcttccagatgatttttatagggatt |
28180965 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 17 - 63
Target Start/End: Complemental strand, 30131114 - 30131068
Alignment:
| Q |
17 |
ggatgttattattgcctttgatttaaaggaaatgacactgtcagaga |
63 |
Q |
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| T |
30131114 |
ggatgttattatagcctttaatttaaaggaaatgacaatgtcagaga |
30131068 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 30120112 - 30120068
Alignment:
| Q |
19 |
atgttattattgcctttgatttaaaggaaatgacactgtcagaga |
63 |
Q |
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| T |
30120112 |
atgttattattgcctttgatttaaaggaaacgacaatatcagaga |
30120068 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 161 - 194
Target Start/End: Complemental strand, 30130967 - 30130934
Alignment:
| Q |
161 |
tacacttaagatatgggtgatgcaagaatacaca |
194 |
Q |
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|||| ||||||||||||||||||||||||||||| |
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| T |
30130967 |
tacagttaagatatgggtgatgcaagaatacaca |
30130934 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 78
Target Start/End: Original strand, 21426642 - 21426703
Alignment:
| Q |
17 |
ggatgttattattgcctttgatttaaaggaaatgacactgtcagagactgctctcccagatg |
78 |
Q |
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| T |
21426642 |
ggatgttattattgcccttgatttaaaggaaacaacaatgtcagagatagctcttccagatg |
21426703 |
T |
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