View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11386A_low_51 (Length: 414)
Name: NF11386A_low_51
Description: NF11386A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11386A_low_51 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 7 - 411
Target Start/End: Original strand, 29548084 - 29548488
Alignment:
| Q |
7 |
ggattgaagaacggcttggagatctctgtatactaaaattcagactaaagaagtggtggatagagctaaagtacttgaagctaaactagatggcattttg |
106 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29548084 |
ggattgaagaacggcttggagatctccgtatactaaaattcagactaaagaagtggtggatagagctaaagtacttgaagctaaactagatggcattttg |
29548183 |
T |
|
| Q |
107 |
aatgatcttagatatactacacacattgtaatcaatcaattctaaatttcttatttctctcattttatcatttctgaacagatcatgaagaaggttaatg |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
29548184 |
aatgatcttagatatactacacacattgtaatcaatcaattctaaatttcttatttctctcattttatcatttctgaacagatcatgaaaaaggttaatg |
29548283 |
T |
|
| Q |
207 |
gagtcagcgtgcaaaagcaccttttagtgataaaacactaagatttttcatcagagatactcccaacaaaaggattggaataaaattgagaaacttgcta |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |
|
|
| T |
29548284 |
gagtcagcgtgcaaaagcaccttttagtgataaaacactaagatttttcatcagagatactcccaacgaaaggagaggaataaaattgagaaacttgcta |
29548383 |
T |
|
| Q |
307 |
cagcagatggccaaatcactgaaaatacatatcagattgggagggatccagctcccatgcagtcaacattgctcgcattcactcaatcggaatattgttg |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
29548384 |
cagcagatggccaaatcactgaaaatacatatcagattgggagggatccagctcccatgcagtcaacattgctcgcattcactcaatcggaacattgttg |
29548483 |
T |
|
| Q |
407 |
gacat |
411 |
Q |
| |
|
||||| |
|
|
| T |
29548484 |
gacat |
29548488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University