View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11386A_low_510 (Length: 220)
Name: NF11386A_low_510
Description: NF11386A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11386A_low_510 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 12 - 220
Target Start/End: Original strand, 26933440 - 26933648
Alignment:
| Q |
12 |
agtagcatagaagataagtggcctaatattccaattattactgcacgcttctcaaccataaaaatctgtttagagtttatttgcacccccatcttaaaga |
111 |
Q |
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|||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26933440 |
agtaccatagaagataagtggcctgatattccaattattactgcacgcttctcaaccataaaaatctgtttagagtttatttgcacccccatcttaaaga |
26933539 |
T |
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| Q |
112 |
aataaattatcattccaaattctgcaaatgttgaaagtatcattatgcttgctgttggaaataacctctcaaaacttgtgttgtctcgacccaaaaataa |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
26933540 |
aataaattatcattccaaattctgcaaatgttgaaagtatcattatgcttgctgttggaaataacatctcaaaacttgtgttgtctcgacccaaaaataa |
26933639 |
T |
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| Q |
212 |
tggacccac |
220 |
Q |
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||||||||| |
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| T |
26933640 |
tggacccac |
26933648 |
T |
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