View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11386A_low_518 (Length: 217)
Name: NF11386A_low_518
Description: NF11386A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11386A_low_518 |
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Alignment Details
Target: chr4 (Bit Score: 159; Significance: 8e-85; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 17 - 200
Target Start/End: Complemental strand, 44166965 - 44166782
Alignment:
| Q |
17 |
agaacaatcaaagtgtggaaaaccaaagacttgacatgtttggaatcagtgcaaaacgcacacgacgatgcaataaacgcaatcacagtttctaacgatg |
116 |
Q |
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| T |
44166965 |
agaacaatcaaagtgtggaaaaccaaagacttgacatgtttggaatcattgcaaaacgcacacgacgatgcaataaacgcaatcacagtttctaacgatg |
44166866 |
T |
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| Q |
117 |
gatatgtttacaccggatcaacagatnnnnnnnttaaggtttggaagaaaaataaaggagataagaaacatttgttagttgata |
200 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44166865 |
gatatgtttacaccggatcaacagataaaaaaattaaggtttggaagaaaaataaaggagataagaaacatttgttagttgata |
44166782 |
T |
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