View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11386A_low_519 (Length: 216)
Name: NF11386A_low_519
Description: NF11386A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11386A_low_519 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
| [»] chr1 (1 HSPs) |
| |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 20816612 - 20816827
Alignment:
| Q |
1 |
gcgtgctggaagaacacaaccagggaaatgctttagactttatacggaaagaagtttcaataatgatcttcagccgcagacctatcctgaaattttgaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20816612 |
gcgtgctggaagaacacaaccagggaaatgctttagactttatacggaaagaagtttcaataatgatcttcagccgcagacctatcctgaaattttgaga |
20816711 |
T |
|
| Q |
101 |
tctaatctcgccaacacagttcttactttgaagaaattgggtatagacgatttagtgcattttgactttatggaccctcccgcaccagaaaccttaatgc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
20816712 |
tctaatctcgccaacacagttcttactttgaagaaattgggtatagacgatttagtacattttgactttatggaccctcctgcaccagaaaccttaatgc |
20816811 |
T |
|
| Q |
201 |
gcgctttggaagtgtt |
216 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
20816812 |
gcgctttggaagtgtt |
20816827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 2 - 216
Target Start/End: Complemental strand, 38779532 - 38779318
Alignment:
| Q |
2 |
cgtgctggaagaacacaaccagggaaatgctttagactttatacggaaagaagtttcaataatgatcttcagccgcagacctatcctgaaattttgagat |
101 |
Q |
| |
|
|||||||||||||| || || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38779532 |
cgtgctggaagaactcagccggggaaatgctttagactttataccgaaagaagtttcaataatgatcttcagccgcagacctatcctgaaattttgagat |
38779433 |
T |
|
| Q |
102 |
ctaatctcgccaacacagttcttactttgaagaaattgggtatagacgatttagtgcattttgactttatggaccctcccgcaccagaaaccttaatgcg |
201 |
Q |
| |
|
||||||| ||||||||||||||||| ||||||||| |||||||||| |||||||| ||||||||||| ||||||||||| || || |||||||| ||||| |
|
|
| T |
38779432 |
ctaatcttgccaacacagttcttacattgaagaaactgggtatagatgatttagttcattttgacttcatggaccctcctgcccctgaaaccttgatgcg |
38779333 |
T |
|
| Q |
202 |
cgctttggaagtgtt |
216 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
38779332 |
tgctttggaagtgtt |
38779318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 139; Significance: 7e-73; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 2 - 216
Target Start/End: Complemental strand, 33388491 - 33388277
Alignment:
| Q |
2 |
cgtgctggaagaacacaaccagggaaatgctttagactttatacggaaagaagtttcaataatgatcttcagccgcagacctatcctgaaattttgagat |
101 |
Q |
| |
|
||||| |||||||| ||||| |||||||||| |||||| ||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33388491 |
cgtgccggaagaactcaaccggggaaatgctatagactctataccgaaataagtttcagtaatgatcttcagccgcagacctatcctgaaattttgagat |
33388392 |
T |
|
| Q |
102 |
ctaatctcgccaacacagttcttactttgaagaaattgggtatagacgatttagtgcattttgactttatggaccctcccgcaccagaaaccttaatgcg |
201 |
Q |
| |
|
||||||| || ||||| |||||||| |||||||||||||||||||| |||||||| ||||||||||| ||||||||||| || || |||||||||||||| |
|
|
| T |
33388391 |
ctaatcttgcaaacacggttcttacattgaagaaattgggtatagatgatttagttcattttgacttcatggaccctcctgctcctgaaaccttaatgcg |
33388292 |
T |
|
| Q |
202 |
cgctttggaagtgtt |
216 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
33388291 |
tgctttggaagtgtt |
33388277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University